Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j02
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ975380-1|ABM44413.1|  123|Homo sapiens egl nine-like protein 1...    32   2.1  
BC005369-1|AAH05369.1|  128|Homo sapiens EGLN1 protein protein.        32   2.1  
AL445524-1|CAH72105.1|  426|Homo sapiens egl nine homolog 1 (C. ...    32   2.1  
AL117352-1|CAI23092.1|  426|Homo sapiens egl nine homolog 1 (C. ...    32   2.1  
AJ310543-1|CAC42509.1|  426|Homo sapiens EGLN1 protein protein.        32   2.1  
AF246631-1|AAG34568.1|  426|Homo sapiens SM-20 protein.                32   2.1  
AF229245-1|AAG33965.1|  426|Homo sapiens SM-20 protein.                32   2.1  

>DQ975380-1|ABM44413.1|  123|Homo sapiens egl nine-like protein 1
           transcript variant 2 protein.
          Length = 123

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 54  QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 96


>BC005369-1|AAH05369.1|  128|Homo sapiens EGLN1 protein protein.
          Length = 128

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 54  QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 96


>AL445524-1|CAH72105.1|  426|Homo sapiens egl nine homolog 1 (C.
           elegans) protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394


>AL117352-1|CAI23092.1|  426|Homo sapiens egl nine homolog 1 (C.
           elegans) protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394


>AJ310543-1|CAC42509.1|  426|Homo sapiens EGLN1 protein protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394


>AF246631-1|AAG34568.1|  426|Homo sapiens SM-20 protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394


>AF229245-1|AAG33965.1|  426|Homo sapiens SM-20 protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 297
           ++ DI PK ++   F S R N  ++ P+ +  ++I++WYF  D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,104,782
Number of Sequences: 237096
Number of extensions: 1739139
Number of successful extensions: 5270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5270
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)