Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11i19
         (175 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126483-1|AAI26484.1|  355|Homo sapiens transmembrane protein 1...    31   0.88 
BC126481-1|AAI26482.1|  355|Homo sapiens transmembrane protein 1...    31   0.88 
AK026226-1|BAB15400.1|  355|Homo sapiens protein ( Homo sapiens ...    31   0.88 

>BC126483-1|AAI26484.1|  355|Homo sapiens transmembrane protein 149
           protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 175 CNLGECSATPAEGCEPASGASVAPT 101
           C+ G+C+   AE C P  G +V PT
Sbjct: 76  CSSGQCNPDGAELCSPCGGGAVTPT 100


>BC126481-1|AAI26482.1|  355|Homo sapiens transmembrane protein 149
           protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 175 CNLGECSATPAEGCEPASGASVAPT 101
           C+ G+C+   AE C P  G +V PT
Sbjct: 76  CSSGQCNPDGAELCSPCGGGAVTPT 100


>AK026226-1|BAB15400.1|  355|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22573 fis, clone HSI02387. ).
          Length = 355

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 175 CNLGECSATPAEGCEPASGASVAPT 101
           C+ G+C+   AE C P  G +V PT
Sbjct: 76  CSSGQCNPDGAELCSPCGGGAVTPT 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,198
Number of Sequences: 237096
Number of extensions: 249601
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)