Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11i12
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.2  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   8.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = -3

Query: 634 LYGLTETTACIFQSNQGDSIDVVAE---TVGYIQDHVEVKVVNEQGEIVPFETPGELVVR 464
           + GL     C+F    GDS++  +    T   +Q H+              +  GE+ V+
Sbjct: 530 IVGLKMPRYCLF----GDSVNTASRMEATSQAMQIHISQSTKELLSPSYRVKERGEIEVK 585

Query: 463 GYNNMICYWNEPEKTRQTLDK 401
           G   M  YW E  + R +  K
Sbjct: 586 GKGIMKTYWLEKREHRSSSTK 606



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 33  ISLSLYFWIFPEAVFGNSCVTLRILGNLKRAISP 134
           I  S+ F IFP  +   S + +R +GN    I P
Sbjct: 203 IGASVLFEIFPFCIVFGSDMIVRSIGNSLMVILP 236


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 558 VSATTSILSPWLDWN 602
           +  T+S ++ WL+WN
Sbjct: 313 ILVTSSFITFWLEWN 327


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 558 VSATTSILSPWLDWN 602
           +  T+S ++ WL+WN
Sbjct: 282 ILVTSSFITFWLEWN 296


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 558 VSATTSILSPWLDWN 602
           +  T+S ++ WL+WN
Sbjct: 333 ILVTSSFITFWLEWN 347


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 558 VSATTSILSPWLDWN 602
           +  T+S ++ WL+WN
Sbjct: 282 ILVTSSFITFWLEWN 296


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 118 FKFPRILKVTQEFP 77
           +KFP +++V  EFP
Sbjct: 865 WKFPNLVEVLDEFP 878


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 235 VGVSDKRVGEELCAVVRLREGAALSLDDVTKHLTGEIARFK 113
           VG+  ++VG  +  VV L E   L     T        +FK
Sbjct: 26  VGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFK 66


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 12 HNSPFSIISLSLYFWIFPEAVF 77
          HN+  + ++LS  FW+F    F
Sbjct: 25 HNNMCTSLNLSNLFWLFVGTYF 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,410
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)