Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11i10
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   5.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   9.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = -2

Query: 122 LLCVLAVWRVLKWRERSV 69
           ++C   +W+ +KW  + V
Sbjct: 218 IMCYFCIWKGVKWTGKVV 235


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = -2

Query: 122 LLCVLAVWRVLKWRERSV 69
           ++C   +W+ +KW  + V
Sbjct: 271 IMCYFCIWKGVKWTGKVV 288


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 177 TNTTSCSQPHVLVWSQLQTPL 115
           + TTS  + HVL  + L +PL
Sbjct: 636 STTTSPDKEHVLAHNDLMSPL 656


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 FICYPLQLSVHYCHCPNLVITDV 268
           F+C+ L   + Y H  ++V  D+
Sbjct: 416 FVCFNLMYWIIYLHISDVVADDL 438


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 FICYPLQLSVHYCHCPNLVITDV 268
           F+C+ L   + Y H  ++V  D+
Sbjct: 416 FVCFNLMYWIIYLHISDVVADDL 438


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 58   KTAETERSLHFNTLHTARTQRS 123
            + AET+R  ++ T+H    Q++
Sbjct: 1656 QNAETQRERYYATIHKVALQQA 1677


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 58   KTAETERSLHFNTLHTARTQRS 123
            + AET+R  ++ T+H    Q++
Sbjct: 1652 QNAETQRERYYATIHKVALQQA 1673


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 147 VLVWSQLQTPLCPCRVESVE 88
           +L+ S   TP+ PC  ++ E
Sbjct: 15  ILITSYFVTPVMPCNCKAPE 34


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 121 SLQLRPDQNVWLRTRSSVRSR 183
           S  +RP +NV +    S+R+R
Sbjct: 237 SENVRPRRNVLIERAKSIRAR 257


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +1

Query: 151 WLRTRSSVRSRCHSLLLYLLPTAIVCPLLSLSKFS 255
           W R  S      H   +  +P     PLL L K +
Sbjct: 88  WQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLT 122


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 224 SVHYCHCPNLVITDVE 271
           SVH+CH   +V  D++
Sbjct: 21  SVHHCHHNGVVHRDLK 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,274
Number of Sequences: 438
Number of extensions: 1987
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)