Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11i07
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.70 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.70 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   1.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   1.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   1.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   1.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 48  DVKMNNFILII*NTPVTIDYGHCAFFFSNLQSIKG 152
           DVK+ N +L I N     D+G C      L SI G
Sbjct: 722 DVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 756


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 48  DVKMNNFILII*NTPVTIDYGHCAFFFSNLQSIKG 152
           DVK+ N +L I N     D+G C      L SI G
Sbjct: 760 DVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 794


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 668 SRRQLENCYRKHNKNNNTIHLKLRHNLH 585
           S   + N   K+N NNN  + KL +N++
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 668 SRRQLENCYRKHNKNNNTIHLKLRHNLH 585
           S   + N   K+N NNN  + KL +N++
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 668 SRRQLENCYRKHNKNNNTIHLKLRHNLH 585
           S   + N   K+N NNN  + KL +N++
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 668 SRRQLENCYRKHNKNNNTIHLKLRHNLH 585
           S   + N   K+N NNN  + KL +N++
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 689 IHKTRLKSRRQLENCYRKHNKNNNTIHLKLRHNL 588
           IH     +     N Y  +N NN   + KL +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = -2

Query: 276 NFIDDQGNPVHNPKMSMFPYILV*CKIINI*EHLINVKKNSFP*SIVDLKKK 121
           +  +D GNP+   K S    IL   ++ N+ + ++ V+ +     ++  ++K
Sbjct: 363 SMFNDSGNPILKAKPSEVVQILGWKELPNVGDEILEVENDKILQEVIKFRQK 414


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +3

Query: 198 FYIIQEYMETLTFWDYE 248
           FY + E ++ +  WD++
Sbjct: 103 FYFVHESLKNVLLWDFQ 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,724
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)