Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11i06
(603 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024032-1|AAH24032.1| 716|Homo sapiens YME1-like 1 (S. cerevis... 118 1e-26
BC023507-1|AAH23507.1| 716|Homo sapiens YME1-like 1 (S. cerevis... 118 1e-26
AY358484-1|AAQ88848.1| 716|Homo sapiens YME1L1 protein. 118 1e-26
AL162272-2|CAI12217.1| 716|Homo sapiens YME1-like 1 (S. cerevis... 118 1e-26
AL162272-1|CAC19650.2| 773|Homo sapiens YME1-like 1 (S. cerevis... 118 1e-26
AL160291-4|CAI16906.1| 716|Homo sapiens YME1-like 1 (S. cerevis... 118 1e-26
AL160291-3|CAI16907.1| 773|Homo sapiens YME1-like 1 (S. cerevis... 118 1e-26
AJ132637-1|CAB51858.1| 716|Homo sapiens ATP-dependent metallopr... 118 1e-26
AF151782-1|AAK57555.1| 773|Homo sapiens ATP-dependent metallopr... 118 1e-26
AJ295618-1|CAB99462.1| 517|Homo sapiens putative ATPases protein. 108 1e-23
BC007795-1|AAH07795.1| 740|Homo sapiens YME1-like 1 (S. cerevis... 104 2e-22
Y18314-1|CAB48398.1| 797|Homo sapiens paraplegin-like protein p... 71 2e-12
BC065016-1|AAH65016.1| 797|Homo sapiens AFG3 ATPase family gene... 70 7e-12
BC024282-1|AAH24282.1| 812|Homo sapiens Similar to AFG3 ATPase ... 70 7e-12
Y16610-1|CAA76314.1| 795|Homo sapiens paraplegin protein. 50 6e-06
BC036104-1|AAH36104.1| 795|Homo sapiens spastic paraplegia 7 (p... 50 6e-06
BC035929-1|AAH35929.1| 732|Homo sapiens SPG7 protein protein. 50 6e-06
AF080525-1|AAD28099.1| 795|Homo sapiens paraplegin protein. 50 6e-06
>BC024032-1|AAH24032.1| 716|Homo sapiens YME1-like 1 (S. cerevisiae)
protein.
Length = 716
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 555 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 614
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 615 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 669
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 670 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 715
>BC023507-1|AAH23507.1| 716|Homo sapiens YME1-like 1 (S. cerevisiae)
protein.
Length = 716
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 555 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 614
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 615 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 669
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 670 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 715
>AY358484-1|AAQ88848.1| 716|Homo sapiens YME1L1 protein.
Length = 716
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 555 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 614
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 615 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 669
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 670 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 715
>AL162272-2|CAI12217.1| 716|Homo sapiens YME1-like 1 (S. cerevisiae)
protein.
Length = 716
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 555 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 614
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 615 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 669
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 670 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 715
>AL162272-1|CAC19650.2| 773|Homo sapiens YME1-like 1 (S. cerevisiae)
protein.
Length = 773
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 612 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 671
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 672 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 726
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 727 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 772
>AL160291-4|CAI16906.1| 716|Homo sapiens YME1-like 1 (S. cerevisiae)
protein.
Length = 716
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 555 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 614
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 615 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 669
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 670 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 715
>AL160291-3|CAI16907.1| 773|Homo sapiens YME1-like 1 (S. cerevisiae)
protein.
Length = 773
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 612 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 671
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 672 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 726
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 727 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 772
>AJ132637-1|CAB51858.1| 716|Homo sapiens ATP-dependent
metalloprotease YME1L protein.
Length = 716
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 555 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 614
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 615 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 669
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 670 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 715
>AF151782-1|AAK57555.1| 773|Homo sapiens ATP-dependent
metalloprotease FtsH1 homolog protein.
Length = 773
Score = 118 bits (285), Expect = 1e-26
Identities = 63/166 (37%), Positives = 92/166 (55%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 612 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 671
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 672 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 726
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTKL 106
DS +RAKHI YETLDA +I+ ++ G+K ++
Sbjct: 727 DSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEV 772
>AJ295618-1|CAB99462.1| 517|Homo sapiens putative ATPases protein.
Length = 517
Score = 108 bits (260), Expect = 1e-23
Identities = 60/165 (36%), Positives = 85/165 (51%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 358 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 417
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 418 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 472
Query: 243 DSLDRAKHIXXXXXXXXXXXXXXXXRYETLDADDIRALMNGEKTK 109
DS +RAKHI YETL + + G+ K
Sbjct: 473 DSYERAKHILKTHAKEHKNLAEALLTYETLMPKRFKLFLRGKSWK 517
>BC007795-1|AAH07795.1| 740|Homo sapiens YME1-like 1 (S.
cerevisiae) protein.
Length = 740
Score = 104 bits (250), Expect = 2e-22
Identities = 54/129 (41%), Positives = 76/129 (58%)
Frame = -1
Query: 603 DAHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKIT 424
DA ++K TI+P GP+L H + +P +R++ET+ Q LA MD MGGR EELIFG + IT
Sbjct: 612 DAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 671
Query: 423 SGAASDLKQXXSLARHMVREWGMSERVGXXXXXXXXXXXXXXXXXXXXXXXDSEVRKLLS 244
+GA+SD +A+ MV ++GMSE++G + E+R LL
Sbjct: 672 TGASSDFDNATKIAKRMVTKFGMSEKLG-----VMTYSDTGKLSPETQSAIEQEIRILLR 726
Query: 243 DSLDRAKHI 217
DS +RAKHI
Sbjct: 727 DSYERAKHI 735
>Y18314-1|CAB48398.1| 797|Homo sapiens paraplegin-like protein
protein.
Length = 797
Score = 71.3 bits (167), Expect = 2e-12
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = -1
Query: 600 AHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITS 421
A L KV+IIP G L + Y+P KE+Y TK+Q L M +GGRA EE+ FG +IT+
Sbjct: 588 ADPLLKVSIIPRGKGLGYAQYLP-KEQYLYTKEQLLDRMCMTLGGRASEEIFFG--RITT 644
Query: 420 GAASDLKQXXSLARHMVREWGMSERVG 340
GA DL++ A + ++GM+E+VG
Sbjct: 645 GAQDDLRKVTQSAYAQIVQFGMNEKVG 671
>BC065016-1|AAH65016.1| 797|Homo sapiens AFG3 ATPase family gene
3-like 2 (yeast) protein.
Length = 797
Score = 69.7 bits (163), Expect = 7e-12
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = -1
Query: 600 AHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITS 421
A L KV+IIP G L + Y+P KE+Y TK+Q L M +GGR EE+ FG +IT+
Sbjct: 588 ADPLLKVSIIPRGKGLGYAQYLP-KEQYLYTKEQLLDRMCMTLGGRVSEEIFFG--RITT 644
Query: 420 GAASDLKQXXSLARHMVREWGMSERVG 340
GA DL++ A + ++GM+E+VG
Sbjct: 645 GAQDDLRKVTQSAYAQIVQFGMNEKVG 671
>BC024282-1|AAH24282.1| 812|Homo sapiens Similar to AFG3 ATPase
family gene 3-like 2 (yeast) protein.
Length = 812
Score = 69.7 bits (163), Expect = 7e-12
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = -1
Query: 600 AHXLHKVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITS 421
A L KV+IIP G L + Y+P KE+Y TK+Q L M +GGR EE+ FG +IT+
Sbjct: 603 ADPLLKVSIIPRGKGLGYAQYLP-KEQYLYTKEQLLDRMCMTLGGRVSEEIFFG--RITT 659
Query: 420 GAASDLKQXXSLARHMVREWGMSERVG 340
GA DL++ A + ++GM+E+VG
Sbjct: 660 GAQDDLRKVTQSAYAQIVQFGMNEKVG 686
>Y16610-1|CAA76314.1| 795|Homo sapiens paraplegin protein.
Length = 795
Score = 50.0 bits (114), Expect = 6e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = -1
Query: 585 KVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITSGAASD 406
KV+I P + A + ++++ TK+Q M +GGRA E L F ++TSGA D
Sbjct: 593 KVSITPRTNAALGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDD 650
Query: 405 LKQXXSLARHMVREWGMSERVG 340
L++ +A MV+++GM+ +G
Sbjct: 651 LRKVTRIAYSMVKQFGMAPGIG 672
>BC036104-1|AAH36104.1| 795|Homo sapiens spastic paraplegia 7 (pure
and complicated autosomal recessive) protein.
Length = 795
Score = 50.0 bits (114), Expect = 6e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = -1
Query: 585 KVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITSGAASD 406
KV+I P + A + ++++ TK+Q M +GGRA E L F ++TSGA D
Sbjct: 593 KVSITPRTNAALGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDD 650
Query: 405 LKQXXSLARHMVREWGMSERVG 340
L++ +A MV+++GM+ +G
Sbjct: 651 LRKVTRIAYSMVKQFGMAPGIG 672
>BC035929-1|AAH35929.1| 732|Homo sapiens SPG7 protein protein.
Length = 732
Score = 50.0 bits (114), Expect = 6e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = -1
Query: 585 KVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITSGAASD 406
KV+I P + A + ++++ TK+Q M +GGRA E L F ++TSGA D
Sbjct: 530 KVSITPRTNAALGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDD 587
Query: 405 LKQXXSLARHMVREWGMSERVG 340
L++ +A MV+++GM+ +G
Sbjct: 588 LRKVTRIAYSMVKQFGMAPGIG 609
>AF080525-1|AAD28099.1| 795|Homo sapiens paraplegin protein.
Length = 795
Score = 50.0 bits (114), Expect = 6e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = -1
Query: 585 KVTIIPXGPSLXHTAYIPXKERYHETKQQFLAMMDTMMGGRAXEELIFGPEKITSGAASD 406
KV+I P + A + ++++ TK+Q M +GGRA E L F ++TSGA D
Sbjct: 593 KVSITPRTNAALGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDD 650
Query: 405 LKQXXSLARHMVREWGMSERVG 340
L++ +A MV+++GM+ +G
Sbjct: 651 LRKVTRIAYSMVKQFGMAPGIG 672
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,599,873
Number of Sequences: 237096
Number of extensions: 446023
Number of successful extensions: 817
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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