Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11i04
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 572 DPQWQNQIEKDLQDA 528
           + +W+N+ E D QDA
Sbjct: 343 EEEWENENESDYQDA 357


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = -2

Query: 628 DGNLSLLPCLPFCHQKLQWILNGRTKLKKIFKMHKILLFLRKMKTYKY 485
           DG   ++   P C  K+ W +        +F  + I     K  TY+Y
Sbjct: 477 DGIRDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEY 524


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = -2

Query: 628 DGNLSLLPCLPFCHQKLQWILNGRTKLKKIFKMHKILLFLRKMKTYKY 485
           DG   ++   P C  K+ W +        +F  + I     K  TY+Y
Sbjct: 530 DGIRDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEY 577


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 283 KLKLEELRVKLSNDF 327
           +LK EEL  K++ND+
Sbjct: 505 QLKSEELNAKVTNDW 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,240
Number of Sequences: 438
Number of extensions: 3785
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)