Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11i02
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   2.2  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    25   9.0  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   9.0  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.0  

>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 22/86 (25%), Positives = 38/86 (44%)
 Frame = +2

Query: 170 HFRSEFERQEHPNLSVSLALQRRSRS*MTLHEKLSHSENAKLLINIDQVCKFLNFFIHIQ 349
           HF  EF+R++  ++S      RR RS      K + S   +  + +D +   ++F   I 
Sbjct: 242 HFIQEFKRKQKIDISDDPRALRRLRS-ACERAKRALSSVTQTTVEVDSLSNGIDFSSSIT 300

Query: 350 TLRFSILNFNM*RHKSIDPPCPLSHD 427
             RF  +N    +  +IDP   +  D
Sbjct: 301 RARFEDINATTFK-ATIDPVAKVLKD 325


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = -1

Query: 84  INIINRL--LFSNLVVCFFG 31
           IN I++L  LFS+ V+CFFG
Sbjct: 92  INEIHKLPILFSSFVLCFFG 111


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 488 GAIHKVRHTLMGRGGITEV*HRVTRGMGGQYFCDV 384
           G    +   L+G GG + +   +    GGQY C +
Sbjct: 156 GERFNITQRLLGIGGFSRIYMAMDNNTGGQYACKI 190


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 432 HFGDTPPPH*RVTYFMDGPFAEVDNYG 512
           H  + PP + RV  F +G  + +D+YG
Sbjct: 360 HTSEQPPTYFRVNKFTEGFQSIIDSYG 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,918
Number of Sequences: 5004
Number of extensions: 44485
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)