Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11h22
         (175 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538033-1|CAD97978.1|  822|Homo sapiens hypothetical protein pr...    31   0.88 
AL138759-1|CAD13191.1|  838|Homo sapiens helicase, lymphoid-spec...    31   0.88 
AF155827-1|AAF82262.1|  838|Homo sapiens proliferation-associate...    31   0.88 
AB113249-1|BAD24805.1|  782|Homo sapiens lymphoid specific helic...    31   0.88 
AB113248-1|BAD24804.1|  809|Homo sapiens lymphoid specific helic...    31   0.88 
AB102723-1|BAD10851.1|  884|Homo sapiens lymphoid specific helic...    31   0.88 
BC034937-1|AAH34937.1|  654|Homo sapiens C10orf64 protein protein.     28   6.2  
AK127650-1|BAC87073.1| 1042|Homo sapiens protein ( Homo sapiens ...    28   6.2  

>BX538033-1|CAD97978.1|  822|Homo sapiens hypothetical protein
           protein.
          Length = 822

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYHNQWKF 10
           M ++ +  +++KL RN   +Y +    ++H V+I+ F   M+  N   H  WK+
Sbjct: 284 MLYHGTQEERQKLVRN---IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKY 334


>AL138759-1|CAD13191.1|  838|Homo sapiens helicase,
           lymphoid-specific protein.
          Length = 838

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYHNQWKF 10
           M ++ +  +++KL RN   +Y +    ++H V+I+ F   M+  N   H  WK+
Sbjct: 300 MLYHGTQEERQKLVRN---IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKY 350


>AF155827-1|AAF82262.1|  838|Homo sapiens proliferation-associated
           SNF2-like protein protein.
          Length = 838

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYHNQWKF 10
           M ++ +  +++KL RN   +Y +    ++H V+I+ F   M+  N   H  WK+
Sbjct: 300 MLYHGTQEERQKLVRN---IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKY 350


>AB113249-1|BAD24805.1|  782|Homo sapiens lymphoid specific helicase
           variant10 protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYHNQWKF 10
           M ++ +  +++KL RN   +Y +    ++H V+I+ F   M+  N   H  WK+
Sbjct: 300 MLYHGTQEERQKLVRN---IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKY 350


>AB113248-1|BAD24804.1|  809|Homo sapiens lymphoid specific helicase
           variant9 protein.
          Length = 809

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYHNQWKF 10
           M ++ +  +++KL RN   +Y +    ++H V+I+ F   M+  N   H  WK+
Sbjct: 300 MLYHGTQEERQKLVRN---IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKY 350


>AB102723-1|BAD10851.1|  884|Homo sapiens lymphoid specific helicase
           variant8 protein.
          Length = 884

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYHNQWKF 10
           M ++ +  +++KL RN   +Y +    ++H V+I+ F   M+  N   H  WK+
Sbjct: 300 MLYHGTQEERQKLVRN---IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKY 350


>BC034937-1|AAH34937.1|  654|Homo sapiens C10orf64 protein protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 150 IKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYH-NQWKFQ 7
           +K  + F+ L NV+HK+++S L   ++S+       N +N+   +W  Q
Sbjct: 380 VKNLQAFQVLQNVFHKASDSVLCIQVLSVIRTMWAWNARNFFLLEWTLQ 428


>AK127650-1|BAC87073.1| 1042|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45748 fis, clone LYMPB1000158. ).
          Length = 1042

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 150 IKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYH-NQWKFQ 7
           +K  + F+ L NV+HK+++S L   ++S+       N +N+   +W  Q
Sbjct: 380 VKNLQAFQVLQNVFHKASDSVLCIQVLSVIRTMWAWNARNFFLLEWTLQ 428


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,830,973
Number of Sequences: 237096
Number of extensions: 200735
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)