Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11h22
(175 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 24 0.19
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 24 0.19
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 23 0.26
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 23 0.34
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 0.45
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 0.45
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 1.4
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 1.4
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 1.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 19 4.2
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 19 4.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 19 5.5
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 19 7.3
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 19 7.3
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 19 7.3
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 19 7.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 19 7.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 19 7.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 19 7.3
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 19 7.3
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 18 9.6
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 18 9.6
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 18 9.6
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 18 9.6
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 23.8 bits (49), Expect = 0.19
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 105 KSTNSKLHSVLISIFTDFMQKNNKNYHNQWKFQ 7
KSTN K+ +I +F QK +K +W Q
Sbjct: 67 KSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQ 99
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 23.8 bits (49), Expect = 0.19
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 105 KSTNSKLHSVLISIFTDFMQKNNKNYHNQWKFQ 7
KSTN K+ +I +F QK +K +W Q
Sbjct: 50 KSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQ 82
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 23.4 bits (48), Expect = 0.26
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 150 IKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKN 40
+K FRN+ Y + N + F DF+QKN
Sbjct: 106 VKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKN 142
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 23.0 bits (47), Expect = 0.34
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 132 FRNLINVYHKSTNSKLHSVLISIFTDF 52
+RNL++ + TNS +L +T+F
Sbjct: 271 WRNLMDEHSNRTNSDPRMILTEAYTEF 297
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 0.45
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 162 YVSNIKKKKLFRNLINV 112
Y +N KKL+ N+IN+
Sbjct: 314 YNNNYNSKKLYYNIINI 330
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 0.45
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 162 YVSNIKKKKLFRNLINV 112
Y +N KKL+ N+IN+
Sbjct: 325 YNNNYNSKKLYYNIINI 341
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 162 YVSNIKKKKLFRNLINV 112
Y +N KKL+ N+IN+
Sbjct: 103 YNNNNYNKKLYYNIINI 119
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 162 YVSNIKKKKLFRNLINV 112
Y +N KKL+ N+IN+
Sbjct: 103 YNNNNYNKKLYYNIINI 119
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 20.6 bits (41), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 129 RNLINVYHKSTNSKLHSVLISIFT 58
+ L+ VY +++ K VLI I+T
Sbjct: 304 QRLLAVYAQNSKDKPEDVLIIIYT 327
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 19.4 bits (38), Expect = 4.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 132 FRNLINVYHKSTNSKLHSVLISIFTDF-MQKNNKNY 28
F LINV K+ K + L I+TD+ +Q + +Y
Sbjct: 60 FVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADY 95
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 156 SNIKKKKLFRNLINV 112
+N KKL+ N+IN+
Sbjct: 325 NNNYNKKLYYNIINI 339
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 19.0 bits (37), Expect = 5.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 105 KSTNSKLHSVLISIFTDFMQKNNKNYHN 22
K +S ++ S + ++ NN NY+N
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNYNN 340
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 7.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = -2
Query: 63 FTDFMQKNNKNYHN 22
++++ NN NY+N
Sbjct: 91 YSNYNNYNNNNYNN 104
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 7.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = -2
Query: 63 FTDFMQKNNKNYHN 22
++++ NN NY+N
Sbjct: 91 YSNYNNYNNNNYNN 104
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 7.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = -2
Query: 63 FTDFMQKNNKNYHN 22
++++ NN NY+N
Sbjct: 91 YSNYNNYNNNNYNN 104
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 7.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = -2
Query: 63 FTDFMQKNNKNYHN 22
++++ NN NY+N
Sbjct: 91 YSNYNNYNNNNYNN 104
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2
Query: 141 KKLFRNLINV 112
KKL+ N+IN+
Sbjct: 350 KKLYYNIINI 359
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2
Query: 141 KKLFRNLINV 112
KKL+ N+IN+
Sbjct: 334 KKLYYNIINI 343
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2
Query: 141 KKLFRNLINV 112
KKL+ N+IN+
Sbjct: 352 KKLYYNIINI 361
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -2
Query: 48 QKNNKNYHN 22
Q NN+N HN
Sbjct: 589 QNNNQNKHN 597
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 18.2 bits (35), Expect = 9.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2
Query: 42 NNKNYHNQWK 13
NN NY+N K
Sbjct: 101 NNNNYNNNCK 110
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2
Query: 42 NNKNYHNQWK 13
NN NY+N K
Sbjct: 101 NNNNYNNNCK 110
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2
Query: 42 NNKNYHNQWK 13
NN NY+N K
Sbjct: 101 NNNNYNNNCK 110
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2
Query: 42 NNKNYHNQWK 13
NN NY+N K
Sbjct: 101 NNNNYNNNCK 110
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,441
Number of Sequences: 438
Number of extensions: 749
Number of successful extensions: 24
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used: 2602740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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