Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11h21
(713 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 25 0.54
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 25 0.54
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 25 0.54
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 25 0.54
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 23 2.2
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 23 2.9
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 5.0
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.0
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 6.6
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 6.6
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 6.6
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.6
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 6.6
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 6.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 6.6
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 6.6
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 22 6.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 6.6
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 8.8
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.8
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 8.8
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 8.8
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 8.8
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 8.8
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 8.8
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 8.8
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 8.8
AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase pro... 21 8.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 8.8
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 25.4 bits (53), Expect = 0.54
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 34 NPFRLIKTIPYINRITTKPDFTLFITY 114
+P R+ KTI I RIT + +F+T+
Sbjct: 454 HPIRVAKTIDVIARITFPVAYFMFLTF 480
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 25.4 bits (53), Expect = 0.54
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 34 NPFRLIKTIPYINRITTKPDFTLFITY 114
+P R+ KTI I RIT + +F+T+
Sbjct: 440 HPIRVAKTIDVIARITFPVAYFMFLTF 466
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 25.4 bits (53), Expect = 0.54
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 34 NPFRLIKTIPYINRITTKPDFTLFITY 114
+P R+ KTI I RIT + +F+T+
Sbjct: 474 HPIRVAKTIDVIARITFPVAYFMFLTF 500
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 25.4 bits (53), Expect = 0.54
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 34 NPFRLIKTIPYINRITTKPDFTLFITY 114
+P R+ KTI I RIT + +F+T+
Sbjct: 423 HPIRVAKTIDVIARITFPVAYFMFLTF 449
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 23.4 bits (48), Expect = 2.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 422 SRIYLLPSIFRLTSLLL*HCIILNYYMPS*QSIDLLSLQDFD 547
S+ Y LP +R L H ++LN Y S DL L++FD
Sbjct: 246 SKEYDLPD-YRGEEYLYSHKLLLNRYYLERLSNDLPHLEEFD 286
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 23.0 bits (47), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 422 SRIYLLPSIFRLTSLLL*HCIILNYYMPS*QSIDLLSLQDFD 547
S+ Y LP +R L H ++LN Y S DL L++FD
Sbjct: 246 SKEYDLPD-YRGEEYLYSHKLLLNRYYLERLSNDLPYLEEFD 286
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.2 bits (45), Expect = 5.0
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 620 KRGSRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKL-YNVITAKML 456
+R +SS S++ + N + N N + Y+ N KL YN+I + +
Sbjct: 307 ERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQI 362
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 22.2 bits (45), Expect = 5.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -1
Query: 257 LYFNNCFYCEESALARDKEIAQAV--YDMSLRL 165
L NN FY +E++ DK AQ D LRL
Sbjct: 1431 LLINNVFYEDETSCMLDKTRAQTFDGKDYPLRL 1463
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISSYSHHD 12
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 98 LYL*RTTIIHKLSVIMSSRYLRSA*ATCR 184
LY TTI L +MS++Y + TCR
Sbjct: 304 LYYFSTTINPILYNVMSAKYRNAFKETCR 332
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 8.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 423 EFSASR*YGIYKLEQIVVAV 364
EFS SR YGI ++ AV
Sbjct: 245 EFSISRHYGILHATYVIPAV 264
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
>AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase
protein.
Length = 85
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 416 LHPGNMVSTNLSKSWWLYRLAFF 348
LH S NLS +WL+ +F
Sbjct: 24 LHNNMCTSLNLSNLFWLFVGTYF 46
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 346 KKNANLYSHHD 378
K+N + YSHHD
Sbjct: 2 KRNISNYSHHD 12
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,115
Number of Sequences: 438
Number of extensions: 4014
Number of successful extensions: 36
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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