Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11h18
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104968-1|AAI04969.1|  280|Homo sapiens survival of motor neuro...    33   0.96 
AJ250932-1|CAC16117.2|  269|Homo sapiens survival interacting pr...    33   0.96 
AF027150-1|AAB82297.1|  280|Homo sapiens survival of motor neuro...    33   0.96 
AB037702-1|BAB03509.1|  250|Homo sapiens SMN interacting protein...    33   0.96 
AB037701-1|BAB03508.1|  265|Homo sapiens SMN interacting protein...    33   0.96 

>BC104968-1|AAI04969.1|  280|Homo sapiens survival of motor neuron
           protein interacting protein 1 protein.
          Length = 280

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 47  PEKLKPTIEWQNMQVADFSETRMYISR 127
           PE   PT++WQ  QVA FS  R  +++
Sbjct: 93  PEGYSPTLQWQQQQVAQFSTVRQNVNK 119


>AJ250932-1|CAC16117.2|  269|Homo sapiens survival interacting
           protein 1 protein.
          Length = 269

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 47  PEKLKPTIEWQNMQVADFSETRMYISR 127
           PE   PT++WQ  QVA FS  R  +++
Sbjct: 82  PEGYSPTLQWQQQQVAQFSTVRQNVNK 108


>AF027150-1|AAB82297.1|  280|Homo sapiens survival of motor neuron
           protein interacting protein 1 protein.
          Length = 280

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 47  PEKLKPTIEWQNMQVADFSETRMYISR 127
           PE   PT++WQ  QVA FS  R  +++
Sbjct: 93  PEGYSPTLQWQQQQVAQFSTVRQNVNK 119


>AB037702-1|BAB03509.1|  250|Homo sapiens SMN interacting protein
           1-gamma protein.
          Length = 250

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 47  PEKLKPTIEWQNMQVADFSETRMYISR 127
           PE   PT++WQ  QVA FS  R  +++
Sbjct: 93  PEGYSPTLQWQQQQVAQFSTVRQNVNK 119


>AB037701-1|BAB03508.1|  265|Homo sapiens SMN interacting
           protein1-beta protein.
          Length = 265

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 47  PEKLKPTIEWQNMQVADFSETRMYISR 127
           PE   PT++WQ  QVA FS  R  +++
Sbjct: 93  PEGYSPTLQWQQQQVAQFSTVRQNVNK 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,381,444
Number of Sequences: 237096
Number of extensions: 1806295
Number of successful extensions: 2412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2412
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)