Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11h18
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.29 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.90 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 288 STSKPWSSNACCNPSTHDNVGIWVLKNCFHSITQV 184
           S +  W++  C NP   D++  W+     H+  +V
Sbjct: 100 SCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 214 EELFPFNYTGWF--YFYNINIVFPYF 143
           E + P NY+GW+  + YN+     YF
Sbjct: 198 EYIIPANYSGWYLNHDYNLENKLNYF 223


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 214 EELFPFNYTGWFYFYNINI 158
           E + P NY+GW+  ++ N+
Sbjct: 198 EYIIPANYSGWYLNHDYNL 216


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 470 SIIFLLIKYSSFVKRKLNLFCYS 538
           +IIFLLI++ SF     NL  ++
Sbjct: 133 TIIFLLIRFKSFSLLNFNLLFFN 155


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +2

Query: 191 VIEWKQFFSTHIPTLSCVL 247
           V++WK+ F  ++  L+C++
Sbjct: 105 VLDWKKIFDINLLGLTCMI 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,256
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)