Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11h09
         (632 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030618-1|AAH30618.1|  589|Homo sapiens hypothetical protein LO...   120   6e-27
AK026315-1|BAB15442.1|  506|Homo sapiens protein ( Homo sapiens ...    50   7e-06
BC063561-1|AAH63561.1|  552|Homo sapiens hypothetical protein FL...    47   6e-05
BC000909-1|AAH00909.2|  223|Homo sapiens FLJ22662 protein protein.     47   6e-05
AK092594-1|BAC03923.1|  266|Homo sapiens protein ( Homo sapiens ...    32   1.9  

>BC030618-1|AAH30618.1|  589|Homo sapiens hypothetical protein
           LOC196463 protein.
          Length = 589

 Score =  120 bits (288), Expect = 6e-27
 Identities = 57/131 (43%), Positives = 76/131 (58%)
 Frame = -3

Query: 630 KQKQSEIHNLRDMYRTMRYNDYRHDPLSRCAPCXXXXXXXXXXXARNDLNPANGTYPFRA 451
           ++ QS + ++  M R MRYND+ HDPLS C  C           AR+DLNPANG+YPF+A
Sbjct: 463 RRNQSLVQDMDSMVRLMRYNDFLHDPLSLCKACNPQPNGENAISARSDLNPANGSYPFKA 522

Query: 450 LGHRSHGATDAKITSSLLRKTYQFIAVSSPTYNLSRGVPPFVWSKFDMGPQISHVGHPDV 271
           L  RSHG  D K+TS  L +    +A S PT++    VPPF WS       + H+G PD+
Sbjct: 523 LRQRSHGGIDVKVTSMSLARILSLLAASGPTWD---QVPPFQWSTSPFS-GLLHMGQPDL 578

Query: 270 WMFPPLLHRWE 238
           W F P+   W+
Sbjct: 579 WKFAPVKVSWD 589


>AK026315-1|BAB15442.1|  506|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22662 fis, clone HSI08080. ).
          Length = 506

 Score = 50.0 bits (114), Expect = 7e-06
 Identities = 37/123 (30%), Positives = 54/123 (43%)
 Frame = -3

Query: 630 KQKQSEIHNLRDMYRTMRYNDYRHDPLSRCAPCXXXXXXXXXXXARNDLNPANGTYPFRA 451
           ++ Q ++ +   M   MRYN+Y+ DP SR  PC            R DLN  N +     
Sbjct: 391 RRDQGKVTDTASMKYIMRYNNYKKDPYSRGDPC-------NTICCREDLNSPNPS----- 438

Query: 450 LGHRSHGATDAKITSSLLRKTYQFIAVSSPTYNLSRGVPPFVWSKFDMGPQISHVGHPDV 271
                 G  D K+    L   Y   A+S PT  +  G+P F W +F+   +  H G P+V
Sbjct: 439 ----PGGCYDTKVADIYLASQYTSYAISGPT--VQGGLPVFRWDRFN---KTLHQGMPEV 489

Query: 270 WMF 262
           + F
Sbjct: 490 YNF 492


>BC063561-1|AAH63561.1|  552|Homo sapiens hypothetical protein
           FLJ22662 protein.
          Length = 552

 Score = 46.8 bits (106), Expect = 6e-05
 Identities = 36/123 (29%), Positives = 53/123 (43%)
 Frame = -3

Query: 630 KQKQSEIHNLRDMYRTMRYNDYRHDPLSRCAPCXXXXXXXXXXXARNDLNPANGTYPFRA 451
           ++ Q ++ +   M   MRYN+Y+ DP SR  PC            R DLN  N +     
Sbjct: 437 RRDQGKVTDTASMKYIMRYNNYKKDPYSRGDPC-------NTICCREDLNSPNPS----- 484

Query: 450 LGHRSHGATDAKITSSLLRKTYQFIAVSSPTYNLSRGVPPFVWSKFDMGPQISHVGHPDV 271
                 G  D K+    L   Y   A+S PT  +  G+P F W +F+   +  H G  +V
Sbjct: 485 ----PGGCYDTKVADIYLASQYTSYAISGPT--VQGGLPVFRWDRFN---KTLHQGMAEV 535

Query: 270 WMF 262
           + F
Sbjct: 536 YNF 538


>BC000909-1|AAH00909.2|  223|Homo sapiens FLJ22662 protein protein.
          Length = 223

 Score = 46.8 bits (106), Expect = 6e-05
 Identities = 36/123 (29%), Positives = 53/123 (43%)
 Frame = -3

Query: 630 KQKQSEIHNLRDMYRTMRYNDYRHDPLSRCAPCXXXXXXXXXXXARNDLNPANGTYPFRA 451
           ++ Q ++ +   M   MRYN+Y+ DP SR  PC            R DLN  N +     
Sbjct: 108 RRDQGKVTDTASMKYIMRYNNYKKDPYSRGDPC-------NTICCREDLNSPNPS----- 155

Query: 450 LGHRSHGATDAKITSSLLRKTYQFIAVSSPTYNLSRGVPPFVWSKFDMGPQISHVGHPDV 271
                 G  D K+    L   Y   A+S PT  +  G+P F W +F+   +  H G  +V
Sbjct: 156 ----PGGCYDTKVADIYLASQYTSYAISGPT--VQGGLPVFRWDRFN---KTLHQGMAEV 206

Query: 270 WMF 262
           + F
Sbjct: 207 YNF 209


>AK092594-1|BAC03923.1|  266|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35275 fis, clone PROST2006282, weakly similar to
           TRANSLATION INITIATION FACTOR IF-2. ).
          Length = 266

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 374 PCRAPPTTCPGGCRPSFGVSSTWVRRYLTWATPMCGCSHPCSTAGS 237
           PC A P  C  G     GVS T    +L+W++  CG     S A +
Sbjct: 68  PCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCGVPARSSAASA 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,211,694
Number of Sequences: 237096
Number of extensions: 1936946
Number of successful extensions: 4439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4435
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)