Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11h09
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   7.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   7.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 318  YSKRRAAPPW 347
            Y KRR  PPW
Sbjct: 990  YGKRRKEPPW 999


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 304 SADISRGPPRCVDVPTLAPP 245
           SAD+   P   +DVP   PP
Sbjct: 44  SADLVPEPRYIIDVPPRCPP 63


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 414 ITSSLLRKTYQFIAVSSPTYNLSRGVPP 331
           +  SLL  ++ + AV     N  +G+PP
Sbjct: 465 VLGSLLNPSHMYRAVCGRIENTIQGLPP 492


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 603 LRDMYRTMRYNDY 565
           L +MYRTM  N+Y
Sbjct: 706 LSNMYRTMEANNY 718


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 304 SADISRGPPRCVDVPTLAPP 245
           SAD+   P   +DVP   PP
Sbjct: 44  SADLVPEPRYIIDVPPRCPP 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,771
Number of Sequences: 438
Number of extensions: 3536
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)