Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11g18
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 461 GHQVPPTELETVLLLHPAVKEAGVVGKPHPEDDE 360
           G QV  + + T   + P ++ A      HPE+D+
Sbjct: 95  GFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDD 128


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 391 TPASFTAGWSNRTVSSSVGG 450
           TP  F+ G  N  VSS V G
Sbjct: 207 TPTDFSMGVKNNHVSSKVEG 226


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 587 IGVDPSIYLDEEGFFRTGDLGYYDEDKYFYIVDR 486
           +GV    + D+ G    G +G Y  D+   ++ R
Sbjct: 58  LGVTEKEFFDQMGVHFVGFVGQYGYDRVLSVLGR 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,062
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)