Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11g16
(670 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032762-1|AAH32762.1| 571|Homo sapiens OPTN protein protein. 31 4.9
BC013876-1|AAH13876.1| 577|Homo sapiens optineurin protein. 31 4.9
AL355355-6|CAI16550.1| 571|Homo sapiens optineurin protein. 31 4.9
AL355355-5|CAI16549.1| 577|Homo sapiens optineurin protein. 31 4.9
AF420373-1|AAL76329.1| 577|Homo sapiens optineurin isoform 3 pr... 31 4.9
AF420372-1|AAL76328.1| 577|Homo sapiens optineurin isoform 2 pr... 31 4.9
AF420371-1|AAL76327.1| 577|Homo sapiens optineurin isoform 1 pr... 31 4.9
AF283527-1|AAG00497.1| 577|Homo sapiens FIP2 protein. 30 8.6
AF061034-2|AAC16047.1| 520|Homo sapiens FIP2 protein. 30 8.6
AF061034-1|AAC16046.1| 577|Homo sapiens FIP2 protein. 30 8.6
AB209563-1|BAD92800.1| 393|Homo sapiens Hypothetical protein DK... 30 8.6
>BC032762-1|AAH32762.1| 571|Homo sapiens OPTN protein protein.
Length = 571
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 234 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 293
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 294 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 353
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 354 KLELQVESMLSEIKMEQ 370
>BC013876-1|AAH13876.1| 577|Homo sapiens optineurin protein.
Length = 577
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AL355355-6|CAI16550.1| 571|Homo sapiens optineurin protein.
Length = 571
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 234 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 293
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 294 EALNLQVTSLFKELQEAHTKLSKAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 353
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 354 KLELQVESMLSEIKMEQ 370
>AL355355-5|CAI16549.1| 577|Homo sapiens optineurin protein.
Length = 577
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSKAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AF420373-1|AAL76329.1| 577|Homo sapiens optineurin isoform 3
protein.
Length = 577
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AF420372-1|AAL76328.1| 577|Homo sapiens optineurin isoform 2
protein.
Length = 577
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AF420371-1|AAL76327.1| 577|Homo sapiens optineurin isoform 1
protein.
Length = 577
Score = 30.7 bits (66), Expect = 4.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ ++
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AF283527-1|AAG00497.1| 577|Homo sapiens FIP2 protein.
Length = 577
Score = 29.9 bits (64), Expect = 8.6
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ +
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYPNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AF061034-2|AAC16047.1| 520|Homo sapiens FIP2 protein.
Length = 520
Score = 29.9 bits (64), Expect = 8.6
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 183 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 242
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ +
Sbjct: 243 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYPNK 302
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 303 KLELQVESMLSEIKMEQ 319
>AF061034-1|AAC16046.1| 577|Homo sapiens FIP2 protein.
Length = 577
Score = 29.9 bits (64), Expect = 8.6
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Frame = -3
Query: 446 LRTYGKKI--VSLATKGTRYEVVN-ELFTSHQNIIFGQPENAAKMFKILKKAPQLV---V 285
LR +K+ + +A K + V + E TS+++ I Q E + + +K P+ V V
Sbjct: 240 LREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEV 299
Query: 284 MAGVVQDRLLSKNELLEFSQLPTLDLARSKL---CQVLDSAGSGLVSQLNRSQQILVSH- 117
A +Q L K ++L +L + +L CQ L+ S + S+LN Q+++ +
Sbjct: 300 EALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYPNK 359
Query: 116 -LDKHVEQQNSSIEKNE 69
L+ VE S I+ +
Sbjct: 360 KLELQVESMLSEIKMEQ 376
>AB209563-1|BAD92800.1| 393|Homo sapiens Hypothetical protein
DKFZp686I04222 variant protein.
Length = 393
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 511 TCKNTIILDVLNHSKHSLAKILSK--GLSISVLFFFSPLSQSKKSGNVYLG 657
+C + I+DVL + + A L K G S FFSP+S S VY+G
Sbjct: 16 SCSRSAIMDVLAEANGTFALNLLKTLGKDNSKNVFFSPMSMSCALAMVYMG 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,360,536
Number of Sequences: 237096
Number of extensions: 2051065
Number of successful extensions: 3924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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