Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11g11
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.68 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.68 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.68 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.68 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   1.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   4.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.8  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
           NY  YNN+   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 637 DYIIYNNSRCCNNSFGNHRYLIXNY 711
           +Y  YNN+   NN++   +Y   NY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
           NY  YNN+   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 637 DYIIYNNSRCCNNSFGNHRYLIXNY 711
           +Y  YNN+   NN++   +Y   NY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
           NY  YNN+   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 637 DYIIYNNSRCCNNSFGNHRYLIXNY 711
           +Y  YNN+   NN++   +Y   NY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
           NY  YNN+   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 637 DYIIYNNSRCCNNSFGNHRYLIXNY 711
           +Y  YNN+   NN++   +Y   NY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 646 IYNNSRCCNNSFGNHRYLIXNY 711
           I+NN+   NN++ N+ Y   NY
Sbjct: 90  IHNNNNYNNNNYNNYNYNNNNY 111



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 532 NYIIYNNSRCCNNSFGTHRYLIINY 606
           N  I+NN+   NN++  + Y   NY
Sbjct: 87  NKTIHNNNNYNNNNYNNYNYNNNNY 111



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 649 YNNSRCCNNSFGNHRYLIXN 708
           YNN    NN++ N++ L  N
Sbjct: 101 YNNYNYNNNNYNNYKKLYYN 120


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 646 IYNNSRCCNNSFGNHRYLIXN 708
           I+NN+   NN++ N++ L  N
Sbjct: 90  IHNNNNYNNNNYNNYKKLYYN 110



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 532 NYIIYNNSRCCNNSFGTHR--YLIINY 606
           N  I+NN+   NN++  ++  Y  INY
Sbjct: 87  NKTIHNNNNYNNNNYNNYKKLYYNINY 113


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 67  FLLRFDFNQSCSGFCSDSFYGFRFNNHNF 153
           F L +++  + S       YGF FN+ NF
Sbjct: 369 FPLEYEYVLAVSNRIQKVIYGFDFNDVNF 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,710
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)