Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11g03
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transfer... 164 3e-40
L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transfer... 164 3e-40
BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CA... 164 3e-40
BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CA... 164 3e-40
BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein. 164 3e-40
BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein. 87 4e-17
AK000368-1|BAA91116.1| 251|Homo sapiens protein ( Homo sapiens ... 30 8.8
AB037837-1|BAA92654.1| 1967|Homo sapiens KIAA1416 protein protein. 30 8.8
>L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 164 bits (398), Expect = 3e-40
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQE 504
YHA QHRQW I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++E
Sbjct: 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Query: 503 VCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFII 324
V YTLE I V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV 316
Query: 323 DVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNK 144
D+ ED ++ + N ++A+ELC+ LA D IR +YW Y+ + S + ND+
Sbjct: 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSP 374
Query: 143 TN 138
TN
Sbjct: 375 TN 376
Score = 39.5 bits (88), Expect = 0.011
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEV 501
Y HR+ ++ +EL+F+ +++ D +N AW R +V+ W + E+
Sbjct: 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----EL 220
Query: 500 CYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVI 390
Y + + N S WN R +I + G + AV+
Sbjct: 221 QYVDQLLKEDVRNNSVWNQ-RYFVISNTTGYNDRAVL 256
>L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 164 bits (398), Expect = 3e-40
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQE 504
YHA QHRQW I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++E
Sbjct: 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Query: 503 VCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFII 324
V YTLE I V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV 316
Query: 323 DVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNK 144
D+ ED ++ + N ++A+ELC+ LA D IR +YW Y+ + S + ND+
Sbjct: 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSP 374
Query: 143 TN 138
TN
Sbjct: 375 TN 376
Score = 39.5 bits (88), Expect = 0.011
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEV 501
Y HR+ ++ +EL+F+ +++ D +N AW R +V+ W + E+
Sbjct: 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----EL 220
Query: 500 CYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVI 390
Y + + N S WN R +I + G + AV+
Sbjct: 221 QYVDQLLKEDVRNNSVWNQ-RYFVISNTTGYNDRAVL 256
>BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 164 bits (398), Expect = 3e-40
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQE 504
YHA QHRQW I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++E
Sbjct: 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Query: 503 VCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFII 324
V YTLE I V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV 316
Query: 323 DVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNK 144
D+ ED ++ + N ++A+ELC+ LA D IR +YW Y+ + S + ND+
Sbjct: 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSP 374
Query: 143 TN 138
TN
Sbjct: 375 TN 376
Score = 39.5 bits (88), Expect = 0.011
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEV 501
Y HR+ ++ +EL+F+ +++ D +N AW R +V+ W + E+
Sbjct: 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----EL 220
Query: 500 CYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVI 390
Y + + N S WN R +I + G + AV+
Sbjct: 221 QYVDQLLKEDVRNNSVWNQ-RYFVISNTTGYNDRAVL 256
>BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 164 bits (398), Expect = 3e-40
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQE 504
YHA QHRQW I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++E
Sbjct: 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Query: 503 VCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFII 324
V YTLE I V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV 316
Query: 323 DVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNK 144
D+ ED ++ + N ++A+ELC+ LA D IR +YW Y+ + S + ND+
Sbjct: 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSP 374
Query: 143 TN 138
TN
Sbjct: 375 TN 376
Score = 39.5 bits (88), Expect = 0.011
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEV 501
Y HR+ ++ +EL+F+ +++ D +N AW R +V+ W + E+
Sbjct: 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----EL 220
Query: 500 CYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVI 390
Y + + N S WN R +I + G + AV+
Sbjct: 221 QYVDQLLKEDVRNNSVWNQ-RYFVISNTTGYNDRAVL 256
>BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein.
Length = 376
Score = 164 bits (398), Expect = 3e-40
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQE 504
YHA QHRQW I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++E
Sbjct: 197 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 256
Query: 503 VCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFII 324
V YTLE I V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++
Sbjct: 257 VQYTLEMIKLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV 313
Query: 323 DVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNK 144
D+ ED ++ + N ++A+ELC+ LA D IR +YW Y+ + S + ND+
Sbjct: 314 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSP 371
Query: 143 TN 138
TN
Sbjct: 372 TN 373
Score = 39.5 bits (88), Expect = 0.011
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEV 501
Y HR+ ++ +EL+F+ +++ D +N AW R +V+ W + E+
Sbjct: 163 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----EL 217
Query: 500 CYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVI 390
Y + + N S WN R +I + G + AV+
Sbjct: 218 QYVDQLLKEDVRNNSVWNQ-RYFVISNTTGYNDRAVL 253
>BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein.
Length = 214
Score = 87.4 bits (207), Expect = 4e-17
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQE 504
YHA QHRQW I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++E
Sbjct: 109 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 168
Query: 503 VCYTLE-KINFVKNNESAWNYLR 438
V + +FV N + YLR
Sbjct: 169 VQLVISFTCSFVTNMFACLPYLR 191
Score = 39.5 bits (88), Expect = 0.011
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = -2
Query: 680 YHAXQHRQWAIKPFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEV 501
Y HR+ ++ +EL+F+ +++ D +N AW R +V+ W + E+
Sbjct: 75 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----EL 129
Query: 500 CYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVI 390
Y + + N S WN R +I + G + AV+
Sbjct: 130 QYVDQLLKEDVRNNSVWNQ-RYFVISNTTGYNDRAVL 165
>AK000368-1|BAA91116.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ20361 fis, clone HEP16789. ).
Length = 251
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 497 YTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLL 336
Y LE +N++ N W +R ++ D+ GL +F E+Y PFL+
Sbjct: 84 YQLEGVNWLLFN---WYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLV 134
>AB037837-1|BAA92654.1| 1967|Homo sapiens KIAA1416 protein protein.
Length = 1967
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 497 YTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLL 336
Y LE +N++ N W +R ++ D+ GL +F E+Y PFL+
Sbjct: 209 YQLEGVNWLLFN---WYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLV 259
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,692,234
Number of Sequences: 237096
Number of extensions: 1741705
Number of successful extensions: 7572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7562
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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