Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11g02
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 2.7
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 3.6
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 6.3
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 25 6.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 6.3
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 6.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.3
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 25 8.4
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -1
Query: 482 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 306
K + +Q LK T T S+ ST D++ LP+ ++++TN K N+N++ +
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832
Query: 305 N---NDAQITRLLK 273
+ N + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -1
Query: 575 DYKYGESAALNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 411
+ ++G +A +++ LIE + + +++ +I + P+D + Q+Q + + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 150 LTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKAFSF 275
+T K + +G ++ +F+ D N+ F+N+ TY SF
Sbjct: 190 MTIKMLEKRFKKG-EYTTLESFVKDLNQMFINAKTYNAPGSF 230
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 436 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 335
LRR++R+S A PK+ NS ++ R+ MF
Sbjct: 27 LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 329 NMNVNKIFNNDAQITRLLKGESLSVS 252
+++ NKI N +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 6.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Frame = -1
Query: 560 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDPKT-LETAQ-Q 411
E A + L+ I + GD ++ V LPKDK G+ +EAL T E A Q
Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572
Query: 410 SMYSTEVDLYLPKF 369
+ +DL L F
Sbjct: 573 GVGKLNLDLDLGLF 586
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 6.3
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Frame = -1
Query: 569 KYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD--------------PK 432
K E +N +L + K +SSL V + + +TQL E K+ K
Sbjct: 851 KVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLK 909
Query: 431 TLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLLKGESLSVS 252
+LE +Q +++ +L++ K+ + +++ S+ K+ +I+ LK E++S S
Sbjct: 910 SLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEEISN-LKEENMSQS 968
Query: 251 EAI 243
+AI
Sbjct: 969 QAI 971
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 421 RLSKACIAPKSICIFPNSKLKRRRISKMF 335
RLS C K F KR+R+SK F
Sbjct: 352 RLSDVCFEEKVYTDFSKKGSKRKRVSKKF 380
>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 69
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/42 (23%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 150 LTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNS-LTYRKAFS 272
+ Y+C +K+Y + + S++L++ FL++ L + ++F+
Sbjct: 26 INYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSFA 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,737
Number of Sequences: 5004
Number of extensions: 36464
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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