Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f24
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    29   0.58 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   0.58 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.3  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.5  

>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 298 YFQSSSVKKKSLIPL*QTCKYFICFPLL 215
           YF++    +K L PL    KY  CFPLL
Sbjct: 91  YFETPFFMRKELFPLNPHLKYTSCFPLL 118


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -2

Query: 449  FKRIFHYVVTFF*NTLINEQPKLKNV*DVILKTTKTTYVLSLCLF*KLVLIFSIVFCEKK 270
            +++IF   + +  +    ++ K  N  + ILK + ++YVL+L      +   S+   E+K
Sbjct: 869  YRQIFAIALKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSVLQIWFLSLRLTERK 928

Query: 269  KFNP 258
            KF P
Sbjct: 929  KFVP 932


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 271 KSLIPL*QTCKYFICFPLLIYCNFIFLNK 185
           K LIPL QT   F+  P L YC   F++K
Sbjct: 429 KVLIPLHQTKSVFLYHPQLTYCIVQFIDK 457


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -2

Query: 776 KIIAVVDFKSYLHFVLSFHVMNRIVL--DWEC-FLTSIF-QPLDI 654
           K+  ++DFKSY+ FVL  +     +L   + C F+ S+F +PL I
Sbjct: 55  KLSDLIDFKSYIEFVLKTNNSYSAILISYYRCIFIISLFHRPLTI 99


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 132  LHRFYRLNNNLWHSHQPYLFRNMKLQ*ISKGKQIKYLQVCYNGI 263
            + +FY + + L  +    L  + KLQ  +KG+    L+V ++G+
Sbjct: 1223 MKQFYEIRSTLLQNASGVLVEDPKLQKNAKGQYTSKLKVYFSGL 1266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,585
Number of Sequences: 5004
Number of extensions: 69956
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)