Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f24
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0106 + 20181197-20181535,20188754-20188868,20188929-201892...    30   1.9  

>11_06_0106 +
           20181197-20181535,20188754-20188868,20188929-20189200,
           20189278-20189416,20189534-20189842,20190263-20190579,
           20190907-20191080
          Length = 554

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 108 LWLHRFSKLHRFYRLNNNLWHSHQP 182
           +W+   + L RF RLNNN++H H P
Sbjct: 348 MWIGNCTSL-RFLRLNNNMFHGHIP 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,831
Number of Sequences: 37544
Number of extensions: 325085
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)