Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f24
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.4  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 644 YHKTKKEPIFYMTAYNIIRYIV 579
           Y  + ++P FYM   NI+ Y +
Sbjct: 411 YSTSMRDPAFYMLYQNILSYFL 432


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 138 RFYRLNNNLWHSHQPYLFRNMK 203
           R +R+ NNL++ + PY   N+K
Sbjct: 217 RSWRITNNLFYPYPPYGTFNIK 238


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 620 LVLFL--FYGNITQCLVVEK*MSKNTP 694
           +V+F+  F GNI  C+V+ +  S  TP
Sbjct: 41  VVIFVTGFVGNIITCIVIWRNPSMQTP 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,978
Number of Sequences: 438
Number of extensions: 4675
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)