Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f21
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF482952-1|AAL89754.1|  668|Caenorhabditis elegans CUP-5L protein.     28   6.7  
AF338583-1|AAK19624.1|  611|Caenorhabditis elegans CUP-5 protein.      28   6.7  
AC006679-12|AAM15596.1|  611|Caenorhabditis elegans Coelomocyte ...    28   6.7  
AC006679-11|AAP82643.1|  668|Caenorhabditis elegans Coelomocyte ...    28   6.7  

>U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical
           protein F08D12.6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 347 RHKL*KIGTTIGHPMRLMLMISYNTAKGYVLF 442
           RHK+ KI  T+ HP+++ +  S N+   Y+ F
Sbjct: 45  RHKIRKINITVDHPLKIHI-FSSNSVMTYLSF 75


>AF482952-1|AAL89754.1|  668|Caenorhabditis elegans CUP-5L protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 395 LMLMISY-NTAKGYVLFGHQMGIESSGD--FGNGFQNFILINCFILISILVTSRSHTRFT 565
           L  ++SY N   G ++ G   G+  S D     G   F+LI C + + +   +       
Sbjct: 300 LSTVVSYVNVCNGRIIKGQVSGVGWSFDTLLIGGTDIFVLILCILSLILCCRALIKAHLL 359

Query: 566 ELAINCPY*NILKQPVSVT 622
           ++  +  + N+LK  ++VT
Sbjct: 360 QIKTSDYFENVLKNKITVT 378


>AF338583-1|AAK19624.1|  611|Caenorhabditis elegans CUP-5 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 395 LMLMISY-NTAKGYVLFGHQMGIESSGD--FGNGFQNFILINCFILISILVTSRSHTRFT 565
           L  ++SY N   G ++ G   G+  S D     G   F+LI C + + +   +       
Sbjct: 300 LSTVVSYVNVCNGRIIKGQVSGVGWSFDTLLIGGTDIFVLILCILSLILCCRALIKAHLL 359

Query: 566 ELAINCPY*NILKQPVSVT 622
           ++  +  + N+LK  ++VT
Sbjct: 360 QIKTSDYFENVLKNKITVT 378


>AC006679-12|AAM15596.1|  611|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform a protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 395 LMLMISY-NTAKGYVLFGHQMGIESSGD--FGNGFQNFILINCFILISILVTSRSHTRFT 565
           L  ++SY N   G ++ G   G+  S D     G   F+LI C + + +   +       
Sbjct: 300 LSTVVSYVNVCNGRIIKGQVSGVGWSFDTLLIGGTDIFVLILCILSLILCCRALIKAHLL 359

Query: 566 ELAINCPY*NILKQPVSVT 622
           ++  +  + N+LK  ++VT
Sbjct: 360 QIKTSDYFENVLKNKITVT 378


>AC006679-11|AAP82643.1|  668|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform d protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 395 LMLMISY-NTAKGYVLFGHQMGIESSGD--FGNGFQNFILINCFILISILVTSRSHTRFT 565
           L  ++SY N   G ++ G   G+  S D     G   F+LI C + + +   +       
Sbjct: 300 LSTVVSYVNVCNGRIIKGQVSGVGWSFDTLLIGGTDIFVLILCILSLILCCRALIKAHLL 359

Query: 566 ELAINCPY*NILKQPVSVT 622
           ++  +  + N+LK  ++VT
Sbjct: 360 QIKTSDYFENVLKNKITVT 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,612
Number of Sequences: 27780
Number of extensions: 244123
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)