Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f17
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...   104   1e-23
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    95   1e-20
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    38   0.002
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    34   0.017
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    29   0.85 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    28   1.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   6.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   7.9  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   7.9  

>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score =  104 bits (250), Expect = 1e-23
 Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
 Frame = -2

Query: 556 FMKGVPDAPRCGFSNAVVQIMRMHAVPYE---SHDVLSDENLRQGIKDYSNWPTIPQVFI 386
           FMKG P  P CGFS   +QI+ +  V  +   +++VLS++ LR+GIK++S+WPTIPQ++I
Sbjct: 41  FMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYI 100

Query: 385 NGEFVGGCDIMLQMHQSGELIEELKKVGIKSALLTAEEAKQGEKK 251
           NGEFVGG DI+  MH+SGEL + LK++      L  E+ K  E++
Sbjct: 101 NGEFVGGSDILASMHKSGELHKILKEIN----ALAPEQPKDSEEE 141


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 40/81 (49%), Positives = 59/81 (72%)
 Frame = -2

Query: 556 FMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGE 377
           F+KG P  P CGFS  +V ++R   V Y   ++L+D+++RQG+K +S+WPT PQ++I GE
Sbjct: 162 FLKGTPSEPACGFSRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGE 221

Query: 376 FVGGCDIMLQMHQSGELIEEL 314
           FVGG DI+ +M ++GEL E L
Sbjct: 222 FVGGLDIVSEMIENGELQEML 242


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
 Frame = -2

Query: 526 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 356
           C F  A    +  ++ PY+++++   EN   ++  + + +   T+P +F   +F+GG   
Sbjct: 26  CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSD 85

Query: 355 MLQMHQSG---ELIEELKK 308
           + ++  SG   ++I ELK+
Sbjct: 86  LNKLRSSGTLTKMIAELKE 104


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = -2

Query: 532 PRCGFSNA----VVQIMRMH--AVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFV 371
           P C +S A    + + +R+   AV  E  D    + LR  +   S+  T+P +F+ G  +
Sbjct: 74  PGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSI 133

Query: 370 GGCDIMLQMHQSGEL 326
           GG D +  ++Q  +L
Sbjct: 134 GGSDSVRALYQEEKL 148


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -2

Query: 532 PRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIM 353
           P C  +  V+   ++ A  Y+   + + + ++  +   +   T+P +FI+ + VGG    
Sbjct: 26  PYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDF 85

Query: 352 LQMHQSGEL 326
             + + GEL
Sbjct: 86  QALFKKGEL 94


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 442 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALLTAEEAK 266
           L  G++D+ ++  I  + +    VG     +Q +Q+G +++ELKK + +K+++L     K
Sbjct: 220 LAAGLRDWVDFGVICALLLLNATVG----FVQEYQAGSIVDELKKTMALKASVLRDGRVK 275

Query: 265 QGE 257
           + E
Sbjct: 276 EIE 278


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 258 SPCFASSAVKSALFIPTFFSSSMSSPDWCICSIMSQPPTNS 380
           SP   SS + S+    + FSS++SS      S  S  PT+S
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 118 YFNFNNYVFVSIQYHHLK*IKTIISNTNRKLQN 216
           +F+F + + +   Y+ L   K++I +TN  LQ+
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLIQHTNNLLQS 617


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 32  RYMGHWXFRKXKIVTHXTNSYYIRDFFINTLILTIMSLFLYSTTT*NELKQ*FLI--QIE 205
           +YM  W FRK K V       YIR  F N L L    +    T +   L+   L+   IE
Sbjct: 291 QYMKLWVFRKSKRVAIEDYKEYIR--FYNNLWLVANDMIFGITMSSFILENLHLVVKLIE 348

Query: 206 NYKIKYII 229
           N   +Y I
Sbjct: 349 NITFEYAI 356


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 340 QSGELIEELKKVGIKSALLTAEEAK 266
           + GE ++E++K+GI+ A   AEE++
Sbjct: 298 RKGEDVQEIEKIGIEIAKARAEESQ 322


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 422  IFYTLSKIFITQHIMALVRNCMHPHNLHNSIT 517
            I YT S  F+T   +  +R C H     N +T
Sbjct: 2526 IKYTTSSFFLTDDFVRFIRVCFHSRISGNLLT 2557


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 449 ITQHIMALVRNCMHPHNLHNSITETA 526
           I QH+  ++  C +P NL  S++  A
Sbjct: 136 IVQHLPQMIAICTYPSNLRKSLSSLA 161


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -2

Query: 442 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALL 284
           L  G++D+ ++  I  + +    VG     +Q +Q+G +++ELKK + +K+ ++
Sbjct: 132 LAAGLRDWVDFGVICALLMLNAVVG----FVQEYQAGSIVDELKKSLALKAVVI 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,266
Number of Sequences: 5004
Number of extensions: 45300
Number of successful extensions: 132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)