Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f15
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   1.8  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   7.3  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.3  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   7.3  

>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 530 LCFNDIQ*NVDQI-INVLISGVQSRRRQTYYVR 625
           LC  DIQ N+D++ +N LI  V    R+T Y++
Sbjct: 81  LCLEDIQ-NIDEVSLNKLIEKVGFHNRKTIYLK 112


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 568 DLVNILLDIVKTESHKKISEK 506
           +L+ I+LD++K  SHK+I E+
Sbjct: 142 NLIFIVLDVLKPMSHKRIIEE 162


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 595 LYTTYQDVYDLVNILLDIVKTES 527
           +Y    ++++L+N+L DIV  E+
Sbjct: 425 IYVARHNIFNLINVLSDIVSVEA 447


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 82  FSILHDYFVLSDICNL*RPENPLYIKK 2
           F+I+ DYFV + +  + R   PLY KK
Sbjct: 215 FAIVLDYFVANKVKLIVRLNGPLYDKK 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,011
Number of Sequences: 5004
Number of extensions: 52243
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)