Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f12
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   2.4  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    26   4.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.3  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   7.3  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.6  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 323 LIMLSSTISGFVGAVIPFLFSFFLYTEPIHLSQWK---AAFYILAAYYMGCNAVYVLF 159
           +I LS   + +   VIP+ F+FF+     ++++W+    A       ++   AVYV F
Sbjct: 278 IIWLSIWAARYAAKVIPYFFAFFVSFISNNVTKWRCMAVALEFPITLFLWMLAVYVSF 335


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 596 WLVYLTTSPTVEWVAGSEIVNYIMSTTCLR 507
           WL+ L  +  +EW+   E  +Y++ST C R
Sbjct: 47  WLIKLLAT-NLEWITVEEERDYLVSTICER 75


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 107  HYNHSYSYDSNHIQLEEFSHSKLI 36
            H  H+Y+   N++ LEE+ + KL+
Sbjct: 1931 HAVHNYAIYGNYLHLEEYINKKLL 1954


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -3

Query: 137 WDGNS------GRKTGHYNHSYSYDSNHIQLEEFSHSKLI 36
           WDG+S      G     Y H+++ DS +   E F HS ++
Sbjct: 110 WDGDSQRIIAVGEGKERYGHAFTADSGNSVGEIFGHSSVV 149


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 279 HPIPIQLFLVYRADPSLSMESGVLYIGSVLYG 184
           HP    +F     D  L    GV Y+GS+LYG
Sbjct: 877 HPTHSSVFEQVEPDVDLPGPEGV-YVGSILYG 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,087
Number of Sequences: 5004
Number of extensions: 51687
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)