Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f12
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.9  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 116 KTGHYNHSYSYDSNHIQLEEFSHSKLIQEEN 24
           +T  Y+H ++       LEE ++   IQ +N
Sbjct: 22  QTFTYSHGWTNGKRSTSLEELANRNAIQSDN 52


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 420 SYCINSNIRIAWLPINRFFE*LSRHDRKLQWDP 322
           S  I+ N++   +  N + E  S +D KL+WDP
Sbjct: 59  SQLIDVNLKNQIMTTNLWVE-QSWYDYKLKWDP 90


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 650 NVSLKDATFYTMMSFLTMWLVYLTTSPTVEWVAGS 546
           NVS +D+        +  W+ Y+  S    WV G+
Sbjct: 313 NVS-RDSNSSDFKKLIDNWMTYMPPSGIPNWVPGN 346


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 650 NVSLKDATFYTMMSFLTMWLVYLTTSPTVEWVAGS 546
           NVS +D+        +  W+ Y+  S    WV G+
Sbjct: 313 NVS-RDSNSSDFKKLVDNWMTYMPPSGIPNWVPGN 346


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 543 NRKLYYEYYMSQENN*HLGCPRYHNRF 463
           N+KLYY+ Y+       +  P Y+  F
Sbjct: 112 NKKLYYKNYIINIEQIPVPVPVYYGNF 138


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 543 NRKLYYEYYMSQENN*HLGCPRYHNRF 463
           N+KLYY+ Y+       +  P Y+  F
Sbjct: 337 NKKLYYKNYIINIEQIPVPVPVYYGNF 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,187
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)