Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f11
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   4.7  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   4.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   6.2  

>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 284 IFYKFPFPMIIQKTPSLAAPEKSLPQRNLT 373
           IF +   P +++K PS  +P+ S+P +  T
Sbjct: 145 IFNENSVPRVLKKAPSTHSPQLSVPSKTST 174


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 191 YFFSISLMKIYYPIAIF*HLN*LIRIFAMHQIFYKFPFP 307
           YF   S+  + YP  I      L+ + A+H   YK  FP
Sbjct: 92  YFGYASMFHLSYPTVILGKSCKLLPVIALHVFVYKRKFP 130


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = -2

Query: 446 RFVVTLKRQICHLSTSTLKMSVGETSDFVVVRISPVLPDLEFFV*SLETEIYKIFDALRI 267
           RFV ++K+Q+ + + S+L M      D + + +SPV  D++  V +L + I       ++
Sbjct: 561 RFVKSIKKQVVNYTESSLAM----LGDLLNISVSPV-TDMDAPVPTLNSSIRNSDFNSQL 615

Query: 266 FLLANLNVKI 237
           +L   + V I
Sbjct: 616 YLFETVGVLI 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,913
Number of Sequences: 5004
Number of extensions: 41535
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)