Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f11
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AL021501-1|CAA16414.2|  352|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF025466-1|AAB71034.2|  210|Caenorhabditis elegans Hypothetical ...    28   4.2  
U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein phosp...    28   5.6  
AF003389-12|AAM22065.1|  572|Caenorhabditis elegans Phosphatase ...    28   5.6  
AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase ...    28   5.6  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 263 RIFAMHQIFYKFPFPMIIQKTPSLAAPEKSLPQRNLTFRQLTFLALTLTDDR 418
           R+F  H+ FYK P  ++ ++   +   EKS  Q +   R+LTF++L    DR
Sbjct: 297 RVFHEHERFYKTPQTVVSEEFTLVL--EKSCDQSDPNDRKLTFISLESDSDR 346


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 263 RIFAMHQIFYKFPFPMIIQKTPSLAAPEKSLPQRNLTFRQLTFLALTLTDDR 418
           R+F  H+ FYK P  ++ ++   +   EKS  Q +   R+LTF++L    DR
Sbjct: 297 RVFHEHERFYKTPQTVVSEEFTLVL--EKSCDQSDPNDRKLTFISLESDSDR 346


>AL021501-1|CAA16414.2|  352|Caenorhabditis elegans Hypothetical
           protein Y61B8A.1 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 YFFSISLMKIYYPIAIF*HLN*LIRIFAMHQIFYKFPFPMIIQKTPSL 334
           Y F  S   + YP  +F  ++   +IFA + I +K P  M   KTP L
Sbjct: 20  YNFLASWKGVAYPSHVFQFISLPFQIFAFYVIIFKTPVAMKNVKTPLL 67


>AF025466-1|AAB71034.2|  210|Caenorhabditis elegans Hypothetical
           protein T23F4.2 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = -1

Query: 507 NATKEVPNVSLCA*IMRETRSLCGHTETSNLSSVNVNAKN 388
           N++ E P+  +C+  +   +++ G+ + ++++SVN N KN
Sbjct: 170 NSSTERPSSQICSVFLPFIKTIKGNKKKNSITSVNNNTKN 209


>U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical
           protein K06C4.17 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 193 IKTFTRLHDMFFFELGIRGIF-LFYREIILNLSLVI*LKRSHN 68
           ++ +T L  + + E  +  +F +F+   I+N+S+++ LK SHN
Sbjct: 219 VEKYTFLKVVQYVEENVFSVFKIFFLLFIINVSIILLLKYSHN 261


>AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein
           phosphatase with EF-hands protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 268 IRNASNIL*ISVSNDYTKNSKSGSTGEILTTTKSDVSPTDIFSVDVDR 411
           + N  N   +S  + Y K S   S GE +     D SPT   +VD+DR
Sbjct: 145 VENGRNSPLMSALSHYAKPSLMDSEGETVKKMLEDTSPT---NVDIDR 189


>AF003389-12|AAM22065.1|  572|Caenorhabditis elegans Phosphatase
           with ef hands protein1, isoform b protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 268 IRNASNIL*ISVSNDYTKNSKSGSTGEILTTTKSDVSPTDIFSVDVDR 411
           + N  N   +S  + Y K S   S GE +     D SPT   +VD+DR
Sbjct: 10  VENGRNSPLMSALSHYAKPSLMDSEGETVKKMLEDTSPT---NVDIDR 54


>AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase
           with ef hands protein1, isoform a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 268 IRNASNIL*ISVSNDYTKNSKSGSTGEILTTTKSDVSPTDIFSVDVDR 411
           + N  N   +S  + Y K S   S GE +     D SPT   +VD+DR
Sbjct: 145 VENGRNSPLMSALSHYAKPSLMDSEGETVKKMLEDTSPT---NVDIDR 189


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
           protein F54F11.2 protein.
          Length = 1589

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 278 HQIFYKFPFPMIIQKTPSLAAPEK 349
           H+   KFPFPM+ QKT     P++
Sbjct: 201 HENSTKFPFPMLDQKTDVTTFPDR 224


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 440 QSDLVSRIIQAHNETLGTSLVAFCTR*SYAYF 535
           + DL+    + H + L T  V FC + SY YF
Sbjct: 387 EQDLIYHQQKVHPKQLKTENVIFCNKCSYEYF 418


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 301  VSNDYTKNSKSGSTGEILTTTKSD-VSPTD 387
            +++ YT+ + SG+T E  T+T S  VS TD
Sbjct: 2487 ITDFYTRTTSSGTTSETSTSTSSQTVSETD 2516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,171
Number of Sequences: 27780
Number of extensions: 229172
Number of successful extensions: 556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)