Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f07
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    59   7e-10
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.27 
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   3.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   4.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   7.6  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 29/58 (50%), Positives = 40/58 (68%)
 Frame = -1

Query: 653 NRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
           +R + LGE L+P +      L+GKITGMLLE+ NSELL +LE   +L  +V+EA+ VL
Sbjct: 584 SRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 485 QQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLFSQPNQGAFSE 613
           QQQ H++ + E +H +  E      + K   L  Q  +GAF E
Sbjct: 249 QQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKERGAFME 291


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 150 ENFRYIHFSLIYYLILWELALVLSF 76
           +NF Y+ F  ++ L++W++  + SF
Sbjct: 184 KNFAYLTFISLFVLVIWQILYLRSF 208


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 614 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 489
           +QR++P    ++ G LL+ID + EL+  L  +   +  VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 287  YALLCNFKECKFTNKNT*LSTFLRCELMNSLTFTLTKKFIL 165
            Y L+ +F     TNK + L + L C L N L   + + F+L
Sbjct: 1718 YYLISSFVAISMTNKTSGLPSSLICNLQNFLA-RIARDFLL 1757


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 147 NFRYIHFSLIYYLILWELALVLSFIITFTSVF 52
           N   I ++L+YYLI+    L+ S I  FT  F
Sbjct: 317 NASSIIYTLMYYLIIAPTLLITSAICMFTIFF 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,122
Number of Sequences: 5004
Number of extensions: 38765
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)