Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f07
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943...    68   8e-12
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116...    67   1e-11
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710...    66   2e-11
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717...    64   1e-10
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549...    57   1e-08
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153...    32   0.49 
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109...    30   2.0  

>03_02_0555 +
           9431451-9431688,9432685-9432803,9432886-9433079,
           9433174-9433430,9433544-9433650,9433715-9433888,
           9434359-9434490,9434776-9434955,9435062-9435265
          Length = 534

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 30/53 (56%), Positives = 41/53 (77%)
 Frame = -1

Query: 638 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
           LG RL+PL++R HPDLA KITGMLLE+ NSE++ +L  +  L AK++E V +L
Sbjct: 455 LGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLL 507


>09_01_0079 -
           1159963-1160211,1160303-1160509,1160631-1160801,
           1161732-1161869,1162184-1162273,1162354-1162431,
           1162510-1163166,1163245-1163363,1164305-1164584
          Length = 662

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/53 (56%), Positives = 42/53 (79%)
 Frame = -1

Query: 638 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
           LGE L+PL+ ++  + A K+TGMLLE+D +E+LH+LE  E+LKAKV EA+ VL
Sbjct: 582 LGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 634


>08_02_0163 +
           13470178-13470335,13470635-13470656,13470885-13471055,
           13471157-13471363,13471458-13471700
          Length = 266

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/53 (54%), Positives = 42/53 (79%)
 Frame = -1

Query: 638 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
           LGE L+PL+ ++  D A K+TGMLLE+D +E+LH++E  ++LKAKV EA+ VL
Sbjct: 188 LGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVL 240


>04_04_0435 -
           25170348-25170593,25170989-25171189,25171580-25171756,
           25172284-25172418,25173131-25173262,25173292-25173369,
           25173452-25174108,25174210-25174328,25175897-25176173
          Length = 673

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 29/53 (54%), Positives = 42/53 (79%)
 Frame = -1

Query: 638 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
           LGE L+PL++ +  + A K+TGMLLE+D +E+LH+LE  E+LK+KV EA+ VL
Sbjct: 594 LGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVL 646


>06_03_0614 -
           22753092-22753349,22754059-22754277,22754712-22754960,
           22755186-22755275,22755379-22755456,22755562-22756337,
           22757042-22757384
          Length = 670

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 45/65 (69%)
 Frame = -1

Query: 674 LQQHHSRNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDE 495
           L   +   +   LG+ LFPL++++  + A K+TGMLLE+D +E+L+++E  ++L+ KV E
Sbjct: 575 LASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAE 634

Query: 494 AVAVL 480
           A+ VL
Sbjct: 635 AMKVL 639


>08_01_0181 +
           1530623-1531626,1531723-1531902,1531998-1532177,
           1532363-1532442,1532528-1532701,1533001-1533118,
           1533223-1533301
          Length = 604

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 623 FPLIQRMHPDLAGKITGMLL--EIDNSELLHMLEHAE-SLKAKVDEAVAVL 480
           F  +QR+ P+  GKI G++L  E D  EL+ +    E +L AK+++  A L
Sbjct: 11  FARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAAL 61


>12_01_0144 -
           1097579-1097604,1097940-1098127,1098567-1098720,
           1098825-1099092,1099310-1099550,1099669-1099833,
           1099898-1100298
          Length = 480

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 626 LFPLIQRMHPDLAGKITGMLLEIDNSEL 543
           +F  +Q + P+LA  I GMLL  DN+E+
Sbjct: 10  VFARLQALEPNLAPNIIGMLLTKDNNEM 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,369
Number of Sequences: 37544
Number of extensions: 199956
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)