Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11f07
(677 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05109-1|AAA70421.1| 632|Drosophila melanogaster poly(A)-bindin... 89 5e-18
AY118528-1|AAM49897.1| 634|Drosophila melanogaster LD24412p pro... 89 5e-18
AE013599-2628|AAS64811.1| 634|Drosophila melanogaster CG5119-PH... 89 5e-18
AE013599-2627|AAM68178.1| 634|Drosophila melanogaster CG5119-PG... 89 5e-18
AE013599-2626|AAF57747.1| 634|Drosophila melanogaster CG5119-PF... 89 5e-18
AE013599-2625|AAM68177.1| 634|Drosophila melanogaster CG5119-PE... 89 5e-18
AE013599-2624|AAM68176.1| 634|Drosophila melanogaster CG5119-PD... 89 5e-18
AE013599-2623|AAF57746.1| 634|Drosophila melanogaster CG5119-PC... 89 5e-18
AE013599-2622|AAF57745.1| 634|Drosophila melanogaster CG5119-PB... 89 5e-18
AE013599-2621|AAM68175.1| 634|Drosophila melanogaster CG5119-PA... 89 5e-18
L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic d... 52 1e-06
AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA... 52 1e-06
AE014297-2326|AAF55397.1| 643|Drosophila melanogaster CG5265-PA... 30 2.5
BT023787-1|AAZ41796.1| 662|Drosophila melanogaster LD01568p pro... 30 3.3
AE014297-453|ABI31145.1| 657|Drosophila melanogaster CG1041-PB,... 30 3.3
AE014297-452|AAF54128.2| 662|Drosophila melanogaster CG1041-PA,... 30 3.3
>L05109-1|AAA70421.1| 632|Drosophila melanogaster poly(A)-binding
protein protein.
Length = 632
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 564 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 622
>AY118528-1|AAM49897.1| 634|Drosophila melanogaster LD24412p
protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2628|AAS64811.1| 634|Drosophila melanogaster CG5119-PH,
isoform H protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2627|AAM68178.1| 634|Drosophila melanogaster CG5119-PG,
isoform G protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2626|AAF57747.1| 634|Drosophila melanogaster CG5119-PF,
isoform F protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2625|AAM68177.1| 634|Drosophila melanogaster CG5119-PE,
isoform E protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2624|AAM68176.1| 634|Drosophila melanogaster CG5119-PD,
isoform D protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2623|AAF57746.1| 634|Drosophila melanogaster CG5119-PC,
isoform C protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2622|AAF57745.1| 634|Drosophila melanogaster CG5119-PB,
isoform B protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>AE013599-2621|AAM68175.1| 634|Drosophila melanogaster CG5119-PA,
isoform A protein.
Length = 634
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/59 (69%), Positives = 52/59 (88%)
Frame = -1
Query: 656 RNRNRCLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+ + + LGERL+P+I+ MH +LAGKITGMLLEI+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVL 624
>L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic discs
protein protein.
Length = 2895
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -1
Query: 638 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+GERL+P I ++ A KITGMLLEI +LL ++ E+L+ KV+EA+ ++
Sbjct: 2514 IGERLYPKIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEII 2566
>AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA
protein.
Length = 2885
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -1
Query: 638 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 480
+GERL+P I ++ A KITGMLLEI +LL ++ E+L+ KV+EA+ ++
Sbjct: 2504 IGERLYPKIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEII 2556
>AE014297-2326|AAF55397.1| 643|Drosophila melanogaster CG5265-PA
protein.
Length = 643
Score = 30.3 bits (65), Expect = 2.5
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 127 EMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 276
+ NV K+++ L +K+ + K+FI QR DS+V + + L KLH
Sbjct: 405 QKNVDKLVQDLQMKV-LKFDCYGKDFIKKQRLGPDSFVQMALQLAFFKLH 453
>BT023787-1|AAZ41796.1| 662|Drosophila melanogaster LD01568p
protein.
Length = 662
Score = 29.9 bits (64), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 115 INQTEMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 276
+N + NV K+ L +K+ N K+FI QR DS+V + + L K+H
Sbjct: 426 LNVAQENVDKLADALQMKV-LKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMH 478
>AE014297-453|ABI31145.1| 657|Drosophila melanogaster CG1041-PB,
isoform B protein.
Length = 657
Score = 29.9 bits (64), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 115 INQTEMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 276
+N + NV K+ L +K+ N K+FI QR DS+V + + L K+H
Sbjct: 421 LNVAQENVDKLADALQMKV-LKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMH 473
>AE014297-452|AAF54128.2| 662|Drosophila melanogaster CG1041-PA,
isoform A protein.
Length = 662
Score = 29.9 bits (64), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 115 INQTEMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 276
+N + NV K+ L +K+ N K+FI QR DS+V + + L K+H
Sbjct: 426 LNVAQENVDKLADALQMKV-LKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMH 478
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,072,024
Number of Sequences: 53049
Number of extensions: 371508
Number of successful extensions: 859
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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