Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f07
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    67   9e-12
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    67   9e-12
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    67   9e-12
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    67   9e-12
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z68004-5|CAA91986.1|  114|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
 Frame = -1

Query: 656 RNRNRCLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 483
           + + + LGER++ LI++++P    AGKITGM+LEIDNSEL+ ML+ +E  ++KVDEA +V
Sbjct: 580 QEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASV 639

Query: 482 L 480
           L
Sbjct: 640 L 640


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
 Frame = -1

Query: 656 RNRNRCLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 483
           + + + LGER++ LI++++P    AGKITGM+LEIDNSEL+ ML+ +E  ++KVDEA +V
Sbjct: 520 QEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASV 579

Query: 482 L 480
           L
Sbjct: 580 L 580


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
 Frame = -1

Query: 656 RNRNRCLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 483
           + + + LGER++ LI++++P    AGKITGM+LEIDNSEL+ ML+ +E  ++KVDEA +V
Sbjct: 517 QEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASV 576

Query: 482 L 480
           L
Sbjct: 577 L 577


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
 Frame = -1

Query: 656 RNRNRCLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAV 483
           + + + LGER++ LI++++P    AGKITGM+LEIDNSEL+ ML+ +E  ++KVDEA +V
Sbjct: 580 QEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASV 639

Query: 482 L 480
           L
Sbjct: 640 L 640


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/67 (50%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = -1

Query: 674 LQQHHSRNRNRCLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKV 501
           L Q   + + + LGER++ LI++M P+   AGKITGM+LEIDN+EL+ ML+ AE  ++KV
Sbjct: 609 LAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELFRSKV 668

Query: 500 DEAVAVL 480
           +EA  VL
Sbjct: 669 EEAFGVL 675


>Z68004-5|CAA91986.1|  114|Caenorhabditis elegans Hypothetical
           protein F47B10.6 protein.
          Length = 114

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/27 (37%), Positives = 21/27 (77%)
 Frame = +1

Query: 196 KEFINSQRRNVDSYVFLFVNLHSLKLH 276
           +EF+ SQR+ +++Y+ + +N HS+ L+
Sbjct: 79  EEFVVSQRKQLNAYINI-INFHSISLY 104


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 124 FDLLSHIMGVGFSSFIYYYFHI 59
           F++L+ + G GF+S  Y YF++
Sbjct: 153 FNILAFVFGYGFTSAAYMYFYL 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,150
Number of Sequences: 27780
Number of extensions: 208808
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)