Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f06
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-5|CAB05547.1|  185|Caenorhabditis elegans Hypothetical pr...   141   3e-34
Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    29   2.8  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23527-4|AAC46574.1|  210|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z83113-5|CAB05547.1|  185|Caenorhabditis elegans Hypothetical
           protein K08H10.9 protein.
          Length = 185

 Score =  141 bits (342), Expect = 3e-34
 Identities = 61/121 (50%), Positives = 89/121 (73%)
 Frame = -3

Query: 436 VEYIGFAAGYKIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQ 257
           +E IGF  G +++E++++E P+   EL+ +KFIC DFW+ ++ KQ+DNLRTNHQGVYV+Q
Sbjct: 63  LESIGFRVGRQLVEKVSKESPKLVTELEIVKFICKDFWSSVFGKQVDNLRTNHQGVYVVQ 122

Query: 256 DNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHIHV 77
           D  F  L +F  G QY++ +  ++A+ CGL+RG LA L I +IVT  ++S+PS KFHI V
Sbjct: 123 DGRFTTLRSFPEGDQYVKESGYFLAFPCGLLRGALAGLNIRAIVTPTIESVPSVKFHIQV 182

Query: 76  Q 74
           Q
Sbjct: 183 Q 183


>Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical
           protein ZK20.1 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +2

Query: 26  ILKQCKQSKSRFVLCSLNVYMKFT*RHRLNFCCDNTVNTEISQSTSNEPTSVSNISRSIF 205
           +LK CK ++ RF+    ++   F  R  +    DNTV+  +  STS   T+   + R   
Sbjct: 250 LLKSCKTTECRFIEDG-DIVSSFFDRPSIRIQSDNTVSLRLPLSTSLTTTNGKELFRIQT 308

Query: 206 QVLMTIRKI 232
           +V + +  I
Sbjct: 309 EVELNLEDI 317


>Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical
           protein F55B12.2 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 262 LQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRGGLANLCIN 134
           L+DN   F+  + N    L  AP+Y   +CG IR  ++ L IN
Sbjct: 53  LRDNHLDFIQPYVNIRSDLFIAPKYKILSCG-IRKSMSQLLIN 94


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
           protein.
          Length = 1376

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 559 LDPSRMADDIIFELLHSEIINYSIEKFK 476
           LDPS + D+   EL+HS+I++  +++ K
Sbjct: 465 LDPSELNDEFTEELVHSQIMSNGVDECK 492


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -3

Query: 565 KYLDPSRMADDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAG----YKIM 398
           K  D  + +DD++ ELL   ++  S  +  NN   + ET+    EY GF +     Y I 
Sbjct: 148 KMADVDKFSDDLVIELLDFFVMIRSDVEMANNKTEKLETN---AEYYGFKSYDDSLYDIQ 204

Query: 397 ERLTREWPRFKDE 359
               R  P ++ E
Sbjct: 205 PNTKRPAPLYRPE 217


>U23527-4|AAC46574.1|  210|Caenorhabditis elegans Hypothetical
           protein K09E2.3 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 463 GEKETDLSVVEYIGFAAGYKIMERLTREW 377
           GEK+T++SVV+++G A    +    T +W
Sbjct: 41  GEKKTEISVVDFVGSADVGVLENTFTMQW 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,426
Number of Sequences: 27780
Number of extensions: 307951
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)