Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f04
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.15 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.20 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.61 
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   3.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.3  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.9  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 308 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 201
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -2

Query: 623 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 444
           +II   V+N I+D+  +  ++C ++W G   + +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 443 A 441
           A
Sbjct: 306 A 306


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 308 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 216
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 248 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 144
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 103 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 14
           TPRETA+ L  ++ +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 620 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 519
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = -2

Query: 332 NNRVYFKIHNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTREQWF--FQPAKYEN--D 165
           NN ++  IHNT  +    ++T     NS     +G     ST +         K EN  +
Sbjct: 444 NNNMFGSIHNTTLSLNSTLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEE 503

Query: 164 VLFFIYNRQFNDALELGT-IVNASGDRKAV 78
           VL ++YN+   +   L T I++ S D + +
Sbjct: 504 VLTWVYNKSHIELPLLPTDILSKSIDNQTI 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,165
Number of Sequences: 5004
Number of extensions: 49882
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)