Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11f04
(672 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC074982-1|AAH74982.1| 159|Homo sapiens keratin associated prot... 27 5.5
BC074981-1|AAH74981.1| 159|Homo sapiens keratin associated prot... 27 5.5
BC074919-1|AAH74919.1| 159|Homo sapiens keratin associated prot... 27 5.5
BC074918-1|AAH74918.1| 159|Homo sapiens keratin associated prot... 27 5.5
AJ406950-1|CAC27589.1| 159|Homo sapiens keratin associated prot... 27 5.5
AJ406947-1|CAC27586.1| 159|Homo sapiens keratin associated prot... 27 5.5
BC121094-1|AAI21095.1| 154|Homo sapiens keratin associated prot... 27 5.5
AJ406951-1|CAC27590.1| 154|Homo sapiens keratin associated prot... 27 5.5
AJ406948-1|CAC27587.1| 154|Homo sapiens keratin associated prot... 27 5.5
BC125049-1|AAI25050.1| 401|Homo sapiens keratin associated prot... 30 8.7
BC125048-1|AAI25049.1| 401|Homo sapiens keratin associated prot... 30 8.7
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 30 8.7
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.7
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.7
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.7
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.7
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.7
>BC074982-1|AAH74982.1| 159|Homo sapiens keratin associated protein
9-8 protein.
Length = 159
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 25 TTCSSTPCCQPSCCVSSC 42
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 539 CRPTACSSTPW 571
C+PT C +T W
Sbjct: 9 CQPTCCRTTCW 19
>BC074981-1|AAH74981.1| 159|Homo sapiens keratin associated protein
9-8 protein.
Length = 159
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 25 TTCSSTPCCQPSCCVSSC 42
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 539 CRPTACSSTPW 571
C+PT C +T W
Sbjct: 9 CQPTCCRTTCW 19
>BC074919-1|AAH74919.1| 159|Homo sapiens keratin associated protein
9-3 protein.
Length = 159
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 25 TTCSSTPCCQPSCCVSSC 42
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 539 CRPTACSSTPW 571
C+PT C +T W
Sbjct: 9 CQPTCCRTTCW 19
>BC074918-1|AAH74918.1| 159|Homo sapiens keratin associated protein
9-3 protein.
Length = 159
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 25 TTCSSTPCCQPSCCVSSC 42
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 539 CRPTACSSTPW 571
C+PT C +T W
Sbjct: 9 CQPTCCRTTCW 19
>AJ406950-1|CAC27589.1| 159|Homo sapiens keratin associated protein
9.8 protein.
Length = 159
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 25 TTCSSTPCCQPSCCVSSC 42
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 539 CRPTACSSTPW 571
C+PT C +T W
Sbjct: 9 CQPTCCRTTCW 19
>AJ406947-1|CAC27586.1| 159|Homo sapiens keratin associated protein
9.3 protein.
Length = 159
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 25 TTCSSTPCCQPSCCVSSC 42
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 539 CRPTACSSTPW 571
C+PT C +T W
Sbjct: 9 CQPTCCRTTCW 19
>BC121094-1|AAI21095.1| 154|Homo sapiens keratin associated protein
9-4 protein.
Length = 154
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 30 TTCSSTPCCQPSCCVSSC 47
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 530 PVRCRPTACSSTPW 571
P CR T C +T W
Sbjct: 11 PTCCRTTCCRTTCW 24
>AJ406951-1|CAC27590.1| 154|Homo sapiens keratin associated protein
9.9 protein.
Length = 154
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 30 TTCSSTPCCQPSCCVSSC 47
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 530 PVRCRPTACSSTPW 571
P CR T C +T W
Sbjct: 11 PTCCRTTCCRTTCW 24
>AJ406948-1|CAC27587.1| 154|Homo sapiens keratin associated protein
9.4 protein.
Length = 154
Score = 27.5 bits (58), Expect(2) = 5.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 548 TACSSTPWCSVSCQ*SGC 601
T CSSTP C SC S C
Sbjct: 30 TTCSSTPCCQPSCCVSSC 47
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 530 PVRCRPTACSSTPW 571
P CR T C +T W
Sbjct: 11 PTCCRTTCCRTTCW 24
>BC125049-1|AAI25050.1| 401|Homo sapiens keratin associated protein
10-4 protein.
Length = 401
Score = 29.9 bits (64), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 539 CRPTACSSTPWCSVSCQ*SGC 601
C P +C S+P C V+C+ S C
Sbjct: 57 CTPVSCVSSPCCPVTCEPSPC 77
>BC125048-1|AAI25049.1| 401|Homo sapiens keratin associated protein
10-4 protein.
Length = 401
Score = 29.9 bits (64), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 539 CRPTACSSTPWCSVSCQ*SGC 601
C P +C S+P C V+C+ S C
Sbjct: 57 CTPVSCVSSPCCPVTCEPSPC 77
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 458 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 279
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 278 MSTTTCNCNSRDRVVYGGNSADSTREQW 195
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 458 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 279
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 278 MSTTTCNCNSRDRVVYGGNSADSTREQW 195
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 458 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 279
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 278 MSTTTCNCNSRDRVVYGGNSADSTREQW 195
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 458 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 279
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 278 MSTTTCNCNSRDRVVYGGNSADSTREQW 195
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 458 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 279
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 278 MSTTTCNCNSRDRVVYGGNSADSTREQW 195
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -2
Query: 458 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 279
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 278 MSTTTCNCNSRDRVVYGGNSADSTREQW 195
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,855,732
Number of Sequences: 237096
Number of extensions: 1900917
Number of successful extensions: 4207
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4207
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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