Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f04
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   5.3  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 485 AGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKI 309
           A   +KII   Y++     S     NE  A  + +D  HT + + +FIT  ++N V F +
Sbjct: 57  ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112

Query: 308 HNTKYNQ 288
           +   Y Q
Sbjct: 113 NYPTYTQ 119


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
 Frame = -2

Query: 512 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 357
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG       + K++    
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376

Query: 356 WKFITLWENNR--VYFKIHNT 300
           W F  +   N   V F+ ++T
Sbjct: 377 WPFFNVSTGNSMLVTFRSNST 397


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 414 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 581
           G GCG + +S  +V   +N D D+   ++E +   EVL NN  S     LV+V   +P+
Sbjct: 63  GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 136 STMPWSSVRS*TPRETARPLDTMVKSPVFLTST 38
           ST   ++  + TP+ + +P  T  KSPV +T+T
Sbjct: 388 STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTT 420


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 548 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 462
           W+ +GQEI R Y PL   N   +  G Y++I+
Sbjct: 13  WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,676
Number of Sequences: 27780
Number of extensions: 287433
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)