Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f03
         (591 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-159|AAM68349.1|  174|Drosophila melanogaster CG30432-PA...    35   0.095
BT022922-1|AAY55338.1|  148|Drosophila melanogaster IP08374p pro...    34   0.17 
BT022287-1|AAY54703.1|  148|Drosophila melanogaster IP08174p pro...    34   0.17 

>AE013599-159|AAM68349.1|  174|Drosophila melanogaster CG30432-PA
           protein.
          Length = 174

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 17/71 (23%), Positives = 38/71 (53%)
 Frame = +3

Query: 336 LFYSCSINKLMFKFKCSSMSLLNDFFLNNIIILQIVYRGVKGYLVLIFA*YTIFIFLIKG 515
           L  +C I++ +F    + M    +F LN ++++QI+Y    G + L+   + +  + +  
Sbjct: 24  LLETCQISEQIFFSSIAGMEGRKEF-LNILLVIQIIYIVPVGIICLVIVAFQVTGYRLND 82

Query: 516 FVLYKYASTVQ 548
           FVL+ Y + ++
Sbjct: 83  FVLFSYMNYIE 93


>BT022922-1|AAY55338.1|  148|Drosophila melanogaster IP08374p
           protein.
          Length = 148

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 16/68 (23%), Positives = 37/68 (54%)
 Frame = +3

Query: 345 SCSINKLMFKFKCSSMSLLNDFFLNNIIILQIVYRGVKGYLVLIFA*YTIFIFLIKGFVL 524
           +C I++ +F    + M    +F LN ++++QI+Y    G + L+   + +  + +  FVL
Sbjct: 1   TCQISEQIFFSSIAGMEGRKEF-LNILLVIQIIYIVPVGIICLVIVAFQVTGYRLNDFVL 59

Query: 525 YKYASTVQ 548
           + Y + ++
Sbjct: 60  FSYMNYIE 67


>BT022287-1|AAY54703.1|  148|Drosophila melanogaster IP08174p
           protein.
          Length = 148

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 16/68 (23%), Positives = 37/68 (54%)
 Frame = +3

Query: 345 SCSINKLMFKFKCSSMSLLNDFFLNNIIILQIVYRGVKGYLVLIFA*YTIFIFLIKGFVL 524
           +C I++ +F    + M    +F LN ++++QI+Y    G + L+   + +  + +  FVL
Sbjct: 1   TCQISEQIFFSSIAGMEGRKEF-LNILLVIQIIYIVPVGIICLVIVAFQVTGYRLNDFVL 59

Query: 525 YKYASTVQ 548
           + Y + ++
Sbjct: 60  FSYMNYIE 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,176,106
Number of Sequences: 53049
Number of extensions: 469757
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)