Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f03
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    31   0.81 
U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    27   7.5  
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     27   7.5  
Z49909-7|CAA90110.1|  158|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   QWFICGCIFHNITFATLT*GIKKIIAYVLMHYVFEEC 112
           QW  CGC+  N TF  L  GIK+    +   Y  ++C
Sbjct: 494 QWSGCGCLTSNSTFHNLIHGIKEHPDVLNQGYCHQDC 530


>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 180 VWHSKCSPCTYYFEEVR*LVVIQHSSKT*CIRTYAIIF 67
           VWHS+C  C   FE     +  ++  +  C   + ++F
Sbjct: 41  VWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFHVLF 78


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 327 FIID*KHLTVSSMFLNWKGLQPFLDL 250
           FI+D KHL V SM   WK     +++
Sbjct: 320 FIVDDKHLFVGSMNFEWKSFSQKIEI 345


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 180 VWHSKCSPCTYYFEEVR*LVVIQHSSKT*CIRTYAIIF 67
           VWHS+C  C   FE     +  ++  +  C   + ++F
Sbjct: 41  VWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFHVLF 78


>Z49909-7|CAA90110.1|  158|Caenorhabditis elegans Hypothetical
           protein C14A4.6 protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 298 FLNVPELERSATLFGFGVLIIYLGT 224
           F  +PEL +  +L G   L+IYLGT
Sbjct: 8   FKKIPELVKILSLLGSLTLLIYLGT 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,147,702
Number of Sequences: 27780
Number of extensions: 273977
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)