Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f01
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.48 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   4.5  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   5.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.9  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 541  YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 404
            Y   ++++VP P  +PE   K + +  E  +  V++  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -2

Query: 262 NAEGMQSYIDRYGETIYRVSNEMGPAPR--MTTNKSRNSVCEQLEKLVPIEKLQDRRNWR 89
           N+E ++S +D   + I ++ NE+    R  +    S  ++ E+ +K   I+KL D  + +
Sbjct: 370 NSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQK--NIKKLNDAESLK 427

Query: 88  DLCLMRLSLLKKEMNKKYQSS 26
              L   + ++ E++    S+
Sbjct: 428 SRLLQSRTQMQTELDSYITSN 448


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 475  WFS*QLQA*SRVLGQFQQGVRNKVDSPDEKQ 567
            W+S +  A S VL QF++  R  + S  EK+
Sbjct: 1553 WYSVESNATSHVLQQFEEACRKALSSSAEKR 1583


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 268 HLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPI 119
           H   +  Q+Y+    E + R+ NE+    R+ T+     V ++ E  V I
Sbjct: 123 HRQLQTAQNYLTEMKEALGRIKNELSTNERLDTSAREALVKQESELTVKI 172


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
 Frame = +1

Query: 118 QSVLTSPIVRTPSFCFYLSSYAEPVPFH----C*H---DKLSLRIYQYN-FACLQHSNGL 273
           +++   PI+R  +F  +++SY   +P H    C H   D+L++    ++   C+   +  
Sbjct: 687 RNIAIPPILRLVAFGLFITSYI--IPSHHIRSCKHYFLDRLAILFLTFSPTMCMLSISFE 744

Query: 274 FLEHPKMHISFQV---LPT*LYQYP--LHQQLCRQRDAKLHQGL 390
            L +  + I+  +   L T L +Y   LH +  R++DAK H  L
Sbjct: 745 ALFYVVLFITLGLWMELETELQKYTEQLHPEYSRKKDAKFHLSL 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,348
Number of Sequences: 5004
Number of extensions: 60955
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)