Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11f01
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 47 1e-05
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 38 0.008
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 34 0.093
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 31 1.1
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 29 2.6
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 3.5
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 29 3.5
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 4.6
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 29 4.6
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 29 4.6
03_06_0604 - 35006004-35008580 29 4.6
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 4.6
01_06_1543 - 38138253-38138855,38139000-38139239 29 4.6
11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135 28 6.1
06_01_1076 - 8778210-8778734 28 8.0
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = -2
Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
KK+ LD + + I + QVI H NPP + L+EI+
Sbjct: 104 KKKLFVELDKITKPSAILASNTSSISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRG 163
Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEV-WRL 365
T EV K + E +G + V +++ GF++NRI +++E W L
Sbjct: 164 ADTSEEVFTKVKSFSERLG-KTVICSQDYPGFIVNRILMPMINEAFWAL 211
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = -2
Query: 595 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDG 416
E + K +++ +H +P + +PL+EIV T P+V ++ ++I + P+ + G
Sbjct: 439 EKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPI-VVGNCTG 497
Query: 415 FVLNRI 398
F +NR+
Sbjct: 498 FAVNRM 503
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 34.3 bits (75), Expect = 0.093
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = -2
Query: 595 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDG 416
E + ++ +H +P + +PL+EIV + T P+V ++ ++I + PV + G
Sbjct: 454 EKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHTSPQVVVDLLDVGKKIKKTPV-VVGNCTG 512
Query: 415 FVLNRI 398
F +NR+
Sbjct: 513 FAVNRM 518
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/96 (22%), Positives = 40/96 (41%)
Frame = -2
Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
K+ +L+ V + I E + ++I +H +P + +PL+EIV
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462
Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNR 401
T P+ + + I + PV + GF +NR
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPV-VVGNCTGFAVNR 497
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/124 (18%), Positives = 49/124 (39%)
Frame = -2
Query: 580 KSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNR 401
+ ++ +H +P + +PL+EI+ T +V + ++I + P+ + GF +NR
Sbjct: 441 QDRIAGAHFFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAKQIRKTPI-VVGNCTGFAVNR 499
Query: 400 IQYAILDEVWRLXXXXXXXXXXXXXVMSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGE 221
+ + + L + G+ M L L + + Y+ Y E
Sbjct: 500 MFFPFTQVAYFLVDYGLDVYHIDHVITKFGMPMGPFRLADLVGFGVAIASRKQYLQSYPE 559
Query: 220 TIYR 209
Y+
Sbjct: 560 RCYK 563
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 79 NKDRANYDDLEVFQSVLTSPIVRTPSFCFYLSSYAEPVPFHC*HDKLSLRIYQYNFACLQ 258
N+ R+ +D + L I + +FCFY + +P P + D + + F +
Sbjct: 145 NRQRSFHDSWFKMHNWLEYSIAKDAAFCFYCYLFKQPRPDNFGVDAFTSK----GFTNWK 200
Query: 259 HSNGLFLEH 285
H+ G F EH
Sbjct: 201 HATGSFNEH 209
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 79 NKDRANYDDLEVFQSVLTSPIVRTPSFCFYLSSYAEPVPFHC*HDKLSLRIYQYNFACLQ 258
N+ R+ +D + L I + +FCFY + +P P + D + + F +
Sbjct: 321 NRQRSFHDSWFKMHNWLEYSIAKDAAFCFYCYLFKQPRPDNFGVDAFTSK----GFTNWK 376
Query: 259 HSNGLFLEH 285
H+ G F EH
Sbjct: 377 HATGSFNEH 385
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 520 IVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 404
++PAPW K K +E + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 595 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQ 449
E L H V+ + PV+ +VE+ P TK +A+K M+E GQ
Sbjct: 745 EMLDHLESVLANEPVSVKSGQFIVEVKPQGVTKGLIAEKVLTSMKEKGQ 793
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 520 IVPAPWTKPEVAKKTREIMEEIGQQPVSLT 431
IVPAPW++P K + I+++ G+ + T
Sbjct: 282 IVPAPWSRPLSEKVIKAILKDNGETKTTTT 311
>03_06_0604 - 35006004-35008580
Length = 858
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +1
Query: 130 TSPIVRTPSFCFYLSSYAEPVPFHC*HDKLSLRIYQYNFACLQHSNGLFLEHP 288
TSP+ R PS F LS+ A+P C K+ L+ N LQ N FL +P
Sbjct: 296 TSPVCRCPSENFQLSNPADP-RGGC-RRKIELQNCPGNSTMLQLDNTQFLTYP 346
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -2
Query: 556 PVNPPYYVPL---VEIVPAPWTKPE 491
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
>01_06_1543 - 38138253-38138855,38139000-38139239
Length = 280
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 514 PAPWTKPEVAKKTREIMEEIGQQPV 440
PAP P+VAKK +E++E+ G PV
Sbjct: 84 PAPGA-PDVAKKAKELLEQAGFGPV 107
>11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135
Length = 464
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 449 LSDLFHNFPGFLSNFRLSPGCWDNFNKGYVIRWIHRMRNNDL 574
++D+ N PG +S FR+ W + N+ +++W + N +
Sbjct: 211 ITDVLDNHPGPVSYFRVDSTTWTDDNQ--LVKWFETLSNKSV 250
>06_01_1076 - 8778210-8778734
Length = 174
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -2
Query: 556 PVNPPYYVPL---VEIVPAPWTKPE 491
PV PP Y+ L ++VP PW +PE
Sbjct: 115 PVKPPTYLRLNSKPQLVPNPWRQPE 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,605
Number of Sequences: 37544
Number of extensions: 351256
Number of successful extensions: 940
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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