Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f01
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT009948-1|AAQ22417.1|  315|Drosophila melanogaster RH68464p pro...   248   5e-66
AE014298-2360|AAF48586.2|  315|Drosophila melanogaster CG9914-PA...   248   5e-66
BT015982-1|AAV36867.1|  315|Drosophila melanogaster RE67096p pro...   195   4e-50
AY069189-1|AAL39334.1|  296|Drosophila melanogaster GH23990p pro...   195   4e-50
AE013599-1926|AAF58227.1|  315|Drosophila melanogaster CG10131-P...   195   4e-50
AY051896-1|AAK93320.1| 1420|Drosophila melanogaster LD38533p pro...    31   1.9  
AF241366-1|AAF98388.1|  813|Drosophila melanogaster cleavage and...    31   1.9  
AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-P...    31   1.9  
AE013599-1900|AAM68553.1| 1420|Drosophila melanogaster CG10110-P...    31   1.9  
AE013599-450|AAF59230.1| 1379|Drosophila melanogaster CG2105-PA,...    30   3.4  
AE013599-449|AAS64900.1| 1397|Drosophila melanogaster CG2105-PB,...    30   3.4  
AY071502-1|AAL49124.1|  213|Drosophila melanogaster RE55916p pro...    29   4.5  
AE014297-2525|AAF55558.1|  213|Drosophila melanogaster CG7685-PA...    29   4.5  
BT023931-1|ABB36435.1| 1135|Drosophila melanogaster RE58741p pro...    29   6.0  
AE014297-1441|AAF54739.2| 1111|Drosophila melanogaster CG3532-PA...    29   6.0  

>BT009948-1|AAQ22417.1|  315|Drosophila melanogaster RH68464p
           protein.
          Length = 315

 Score =  248 bits (607), Expect = 5e-66
 Identities = 124/216 (57%), Positives = 150/216 (69%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK   + LD+VV  NTI             S  LK+K+ V+VSHPVNPPYYVPLVEIVPA
Sbjct: 101 KKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHPVNPPYYVPLVEIVPA 160

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXX 329
           PWTKPE  KKTR +MEEIGQ+PV+L+REI+GF LNRIQYAIL+E WRL            
Sbjct: 161 PWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYAILNETWRLVEAGILNVKDID 220

Query: 328 XVMSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSV 149
            VMS GLG RYAFLG LETAHLNAEGM +Y +RY  TIY VS  MGP P+M        V
Sbjct: 221 SVMSNGLGPRYAFLGPLETAHLNAEGMANYFERYSNTIYAVSETMGPTPKM-EGPVAVEV 279

Query: 148 CEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNK 41
            +QL ++VP+++L  RRN+RD CL +LS+LK ++N+
Sbjct: 280 AKQLGEMVPLDQLAQRRNYRDNCLTQLSILKNKLNQ 315


>AE014298-2360|AAF48586.2|  315|Drosophila melanogaster CG9914-PA
           protein.
          Length = 315

 Score =  248 bits (607), Expect = 5e-66
 Identities = 124/216 (57%), Positives = 150/216 (69%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK   + LD+VV  NTI             S  LK+K+ V+VSHPVNPPYYVPLVEIVPA
Sbjct: 101 KKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHPVNPPYYVPLVEIVPA 160

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXX 329
           PWTKPE  KKTR +MEEIGQ+PV+L+REI+GF LNRIQYAIL+E WRL            
Sbjct: 161 PWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYAILNETWRLVEAGILNVKDID 220

Query: 328 XVMSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSV 149
            VMS GLG RYAFLG LETAHLNAEGM +Y +RY  TIY VS  MGP P+M        V
Sbjct: 221 SVMSNGLGPRYAFLGPLETAHLNAEGMANYFERYSNTIYAVSETMGPTPKM-EGPVAVEV 279

Query: 148 CEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNK 41
            +QL ++VP+++L  RRN+RD CL +LS+LK ++N+
Sbjct: 280 AKQLGEMVPLDQLAQRRNYRDNCLTQLSILKNKLNQ 315


>BT015982-1|AAV36867.1|  315|Drosophila melanogaster RE67096p
           protein.
          Length = 315

 Score =  195 bits (476), Expect = 4e-50
 Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 4/217 (1%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK     LD ++++ T+             SEGL+ + Q++V+HP+NPPY++PLVEIVPA
Sbjct: 99  KKSLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFIPLVEIVPA 158

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXX 329
           PWT P   ++TR++M  +GQ+PV+L REI GF  NRIQYAIL+EVWRL            
Sbjct: 159 PWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAILNEVWRLVGSGILSVADVD 218

Query: 328 XVMSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNS 152
            V+S+GLG+RYA LG+LETAHLNA  G+  Y  R+G  I  VS   G  P   T + R +
Sbjct: 219 RVLSQGLGLRYALLGSLETAHLNAPGGVADYFQRFGGEISAVSATYGETP--NTQEDRET 276

Query: 151 VCE---QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 50
           + E   Q E+LV +EKL +RR  RD  L++L+ LKK+
Sbjct: 277 LAEIARQCEQLVSLEKLDERRAVRDEFLIQLAKLKKQ 313


>AY069189-1|AAL39334.1|  296|Drosophila melanogaster GH23990p
           protein.
          Length = 296

 Score =  195 bits (476), Expect = 4e-50
 Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 4/217 (1%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK     LD ++++ T+             SEGL+ + Q++V+HP+NPPY++PLVEIVPA
Sbjct: 80  KKSLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFIPLVEIVPA 139

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXX 329
           PWT P   ++TR++M  +GQ+PV+L REI GF  NRIQYAIL+EVWRL            
Sbjct: 140 PWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAILNEVWRLVGSGILSVADVD 199

Query: 328 XVMSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNS 152
            V+S+GLG+RYA LG+LETAHLNA  G+  Y  R+G  I  VS   G  P   T + R +
Sbjct: 200 RVLSQGLGLRYALLGSLETAHLNAPGGVADYFQRFGGEISAVSATYGETP--NTQEDRET 257

Query: 151 VCE---QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 50
           + E   Q E+LV +EKL +RR  RD  L++L+ LKK+
Sbjct: 258 LAEIARQCEQLVSLEKLDERRAVRDEFLIQLAKLKKQ 294


>AE013599-1926|AAF58227.1|  315|Drosophila melanogaster CG10131-PA
           protein.
          Length = 315

 Score =  195 bits (476), Expect = 4e-50
 Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 4/217 (1%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK     LD ++++ T+             SEGL+ + Q++V+HP+NPPY++PLVEIVPA
Sbjct: 99  KKSLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFIPLVEIVPA 158

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXX 329
           PWT P   ++TR++M  +GQ+PV+L REI GF  NRIQYAIL+EVWRL            
Sbjct: 159 PWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAILNEVWRLVGSGILSVADVD 218

Query: 328 XVMSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNS 152
            V+S+GLG+RYA LG+LETAHLNA  G+  Y  R+G  I  VS   G  P   T + R +
Sbjct: 219 RVLSQGLGLRYALLGSLETAHLNAPGGVADYFQRFGGEISAVSATYGETP--NTQEDRET 276

Query: 151 VCE---QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 50
           + E   Q E+LV +EKL +RR  RD  L++L+ LKK+
Sbjct: 277 LAEIARQCEQLVSLEKLDERRAVRDEFLIQLAKLKKQ 313


>AY051896-1|AAK93320.1| 1420|Drosophila melanogaster LD38533p protein.
          Length = 1420

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 529  LVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 365
            ++E+VP P  KP    K +EI ++  + PVS   ++ GF++  +   I   +W+L
Sbjct: 1122 IIEVVPEPG-KPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLGQKIY--IWQL 1173


>AF241366-1|AAF98388.1|  813|Drosophila melanogaster cleavage and
           polyadenylation specificityfactor protein.
          Length = 813

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 529 LVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 365
           ++E+VP P  KP    K +EI ++  + PVS   ++ GF++  +   I   +W+L
Sbjct: 515 IIEVVPEPG-KPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLGQKIY--IWQL 566


>AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-PA,
            isoform A protein.
          Length = 1455

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 529  LVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 365
            ++E+VP P  KP    K +EI ++  + PVS   ++ GF++  +   I   +W+L
Sbjct: 1157 IIEVVPEPG-KPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLGQKIY--IWQL 1208


>AE013599-1900|AAM68553.1| 1420|Drosophila melanogaster CG10110-PB,
            isoform B protein.
          Length = 1420

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 529  LVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 365
            ++E+VP P  KP    K +EI ++  + PVS   ++ GF++  +   I   +W+L
Sbjct: 1122 IIEVVPEPG-KPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLGQKIY--IWQL 1173


>AE013599-450|AAF59230.1| 1379|Drosophila melanogaster CG2105-PA,
            isoform A protein.
          Length = 1379

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 571  VIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEE 458
            ++ +HP  P  Y  +V+ VP  W + ++AK +R I E+
Sbjct: 1304 IMCAHPRLPGVYANVVQYVP--WIQEQIAKHSRPIKED 1339


>AE013599-449|AAS64900.1| 1397|Drosophila melanogaster CG2105-PB,
            isoform B protein.
          Length = 1397

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 571  VIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEE 458
            ++ +HP  P  Y  +V+ VP  W + ++AK +R I E+
Sbjct: 1322 IMCAHPRLPGVYANVVQYVP--WIQEQIAKHSRPIKED 1357


>AY071502-1|AAL49124.1|  213|Drosophila melanogaster RE55916p
           protein.
          Length = 213

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 517 VPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGF 413
           VPAPW   ++ +K +++M+ +G    S  R++D F
Sbjct: 49  VPAPWNLQQIKRKHQQMMQSLG----SKQRDVDDF 79


>AE014297-2525|AAF55558.1|  213|Drosophila melanogaster CG7685-PA
           protein.
          Length = 213

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 517 VPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGF 413
           VPAPW   ++ +K +++M+ +G    S  R++D F
Sbjct: 49  VPAPWNLQQIKRKHQQMMQSLG----SKQRDVDDF 79


>BT023931-1|ABB36435.1| 1135|Drosophila melanogaster RE58741p
           protein.
          Length = 1135

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 258 LKACKVILIDTERQFIVSAMKW 193
           LK CK +L++T+ ++  S  KW
Sbjct: 219 LKECKCVLLETQHEYAASVSKW 240


>AE014297-1441|AAF54739.2| 1111|Drosophila melanogaster CG3532-PA
           protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 258 LKACKVILIDTERQFIVSAMKW 193
           LK CK +L++T+ ++  S  KW
Sbjct: 219 LKECKCVLLETQHEYAASVSKW 240


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,883,779
Number of Sequences: 53049
Number of extensions: 630920
Number of successful extensions: 1889
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)