Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11f01
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical...   163   8e-41
AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical...   157   5e-39
Z81055-3|CAB02892.2|  434|Caenorhabditis elegans Hypothetical pr...    36   0.027
AF039046-12|AAB94215.1|  299|Caenorhabditis elegans Hydroxy-acyl...    34   0.11 
Z81055-2|CAB02891.2|  437|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical...    29   2.4  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    28   5.5  
U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9a protein.
          Length = 284

 Score =  163 bits (397), Expect = 8e-41
 Identities = 81/208 (38%), Positives = 117/208 (56%)
 Frame = -2

Query: 667 LDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEV 488
           +D + D  TI             ++GL +K + ++ HPVNPP ++PL E+VPAPWT  + 
Sbjct: 76  IDEIADPTTILASSTSTIPASKFTDGLINKERCLIVHPVNPPLFLPLTELVPAPWTSQDT 135

Query: 487 AKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXXXVMSEGL 308
             +  EIM  + Q+PV L +E+ GFV+NR+Q+A+L E WRL             VMS GL
Sbjct: 136 VDRAAEIMRSVKQEPVKLKKEVLGFVVNRLQFALLAETWRLVADGVIGVNDVDAVMSAGL 195

Query: 307 GMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKL 128
           G RYAF G  ET HLNA G++ Y  RY   I  V  +MGP P  T  K  N + E+LE  
Sbjct: 196 GPRYAFNGTCETVHLNAFGVRDYFKRYAAGITAVLKDMGPIPDFTDEKVINKLEEELEPK 255

Query: 127 VPIEKLQDRRNWRDLCLMRLSLLKKEMN 44
           +    ++  +  R+  L+ ++ LKK++N
Sbjct: 256 MSTLNIRKHQAEREEKLVEIAKLKKDLN 283


>AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9b protein.
          Length = 281

 Score =  157 bits (382), Expect = 5e-39
 Identities = 80/208 (38%), Positives = 117/208 (56%)
 Frame = -2

Query: 667 LDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEV 488
           +D + D  TI             ++GL +K + ++ HPVNPP ++PL E+VPAPWT  + 
Sbjct: 76  IDEIADPTTILASSTSTIPASKFTDGLINKERCLIVHPVNPPLFLPLTELVPAPWTSQDT 135

Query: 487 AKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLXXXXXXXXXXXXXVMSEGL 308
             +  EIM  + Q+PV L +E+ GFV+NR+Q+A+L E WRL             VMS GL
Sbjct: 136 VDRAAEIMRSVKQEPVKLKKEVLGFVVNRLQFALLAETWRLVADGVIGVNDVDAVMSAGL 195

Query: 307 GMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKL 128
           G RYAF G  ET HLNA G++ Y  RY   I   + +MGP P  T  K  N + E+LE  
Sbjct: 196 GPRYAFNGTCETVHLNAFGVRDYFKRYAAGI---TADMGPIPDFTDEKVINKLEEELEPK 252

Query: 127 VPIEKLQDRRNWRDLCLMRLSLLKKEMN 44
           +    ++  +  R+  L+ ++ LKK++N
Sbjct: 253 MSTLNIRKHQAEREEKLVEIAKLKKDLN 280


>Z81055-3|CAB02892.2|  434|Caenorhabditis elegans Hypothetical
           protein F01G10.3 protein.
          Length = 434

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 27/108 (25%), Positives = 42/108 (38%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK    NL+++     I             S  L+  S ++  H  NP   + LVEI+  
Sbjct: 130 KKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYG 189

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 365
             T  +      +  E I + PV L      FV NR+ +   D+  +L
Sbjct: 190 SHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRLLHVYFDQSQKL 236


>AF039046-12|AAB94215.1|  299|Caenorhabditis elegans
           Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
          Length = 299

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = -2

Query: 559 HPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILD 380
           H  NP   + LVE+V    T PE         +EI + PV+  ++  GF++NR+    L 
Sbjct: 156 HFFNPVPVMKLVEVVSTDETSPETTNFLFNFCKEIKKLPVA-AKDTPGFIVNRLLIPYLM 214

Query: 379 EVWRLXXXXXXXXXXXXXVMSEGLGMRYAFLGALETA-HLNAEGMQSYIDRYGETI 215
           +  R+              M    G  Y  +G +E   ++  + +QS +  + ETI
Sbjct: 215 DSIRMLERGDATKEDIDTAMR--FGTSYP-MGPIELCDYVGLDVLQSTLKIFRETI 267


>Z81055-2|CAB02891.2|  437|Caenorhabditis elegans Hypothetical
           protein F01G10.2 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/108 (23%), Positives = 41/108 (37%)
 Frame = -2

Query: 688 KKRCXQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPA 509
           KK     LD +   + I             S  L+  ++V+  H  NP   + +VE++  
Sbjct: 133 KKELFTKLDKICKPSCIFGTNTSSLDLNEMSSVLRDPTKVVGIHFFNPANLIRMVEVIYG 192

Query: 508 PWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 365
             T  +      E    I + PV L      FV NR+    L++  +L
Sbjct: 193 SKTSSKAVATAFEACRSIKKLPV-LVGNCPAFVFNRLLGVYLNQSQKL 239


>AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical
           protein W06H8.6 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 199 EMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKKYQSS*C 20
           E  P+P  T+ +S NS+          E+  +R   R L    LS L++E N   +    
Sbjct: 62  ERFPSPLATSAESVNSIKSSCSSRSSAERETERAQRRQLLNTSLSKLREEANMPLRKHLL 121

Query: 19  VFH 11
           +FH
Sbjct: 122 IFH 124


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 580 KSQVIVSHPVNPPYYVPLVEIVPAP 506
           K   + + PV+PP  VP+  IVPAP
Sbjct: 700 KPDPVPAKPVSPPVIVPIDSIVPAP 724


>Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 298 YAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVP 122
           Y   G L  A L+ +G  + ++ Y ET  +++NE          ++R S C  L    P
Sbjct: 375 YRLSGVLLIAQLSTKGSLTALEGYTETAVKIANENRDVISGFITQTRVSACSDLLNWTP 433


>Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 298 YAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVP 122
           Y   G L  A L+ +G  + ++ Y ET  +++NE          ++R S C  L    P
Sbjct: 375 YRLSGVLLIAQLSTKGSLTALEGYTETAVKIANENRDVISGFITQTRVSACSDLLNWTP 433


>AF100307-9|AAC68938.1|  321|Caenorhabditis elegans Hypothetical
           protein T12B5.11 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 211 RVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDL--CLMRLSL 62
           R+    GP      N   N V + LEKL P+++L+ R+  R+L  C+ R  +
Sbjct: 14  RIHRSFGPISPTLYNMPINIVDQVLEKLEPMDRLKIRKVCRNLRTCVDRFGI 65


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -2

Query: 211 RVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLM 74
           R+ N+  P  R   N +   +C + E +   +  +D   +RD  L+
Sbjct: 16  RMYNKQAPTKREELNPTERVICSRFETIFDYDPFKDEYTFRDQALL 61


>U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical
           protein C34E10.11 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 556 PVNPPYYVPLVEIVPAPWTKPE 491
           P+ PP    L  +V APW KPE
Sbjct: 47  PILPPSKKVLYHVVHAPWQKPE 68


>Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical
           protein ZK593.9 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 565 VSHPVNPPYYVPLVEIVPAPWTKPEVAKKTRE 470
           VS  V P  + P+   VPAP  KP+V+KK +E
Sbjct: 421 VSAVVPPDGWAPIP--VPAPTKKPKVSKKEKE 450


>AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical
           protein T08D2.2 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 347 NNFVVNETPNFIKDCVLNSIQNKSVY 424
           N F+V+ TPN + D  +++ +N +V+
Sbjct: 38  NQFLVDSTPNHLHDVAIHTCENYTVF 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,646
Number of Sequences: 27780
Number of extensions: 335891
Number of successful extensions: 866
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)