Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e22
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    29   0.42 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   9.1  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   9.1  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -2

Query: 629 NHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKNRRNKLSGYTIQA 480
           N   Q+ CQ +++ +  +   ++NST  S   H  + N  N++   ++ A
Sbjct: 68  NDACQIACQESSVPDLSSSCDSINSTVESDAGHVVDSNSFNRIDNVSVNA 117


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +3

Query: 162 VIFTKYNHLNVNNF*YQYLKH 224
           ++F++YN+L++N+F   Y+ +
Sbjct: 430 ILFSQYNNLDINSFFSHYMSN 450


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 487 IVYPLSLFRRFFSGLWLFLEPVVELTFLFI 576
           I+Y +  + RF    W FL+ VV   F F+
Sbjct: 545 IMYVVGQYPRFLKAHWKFLKTVVNKLFEFM 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,663
Number of Sequences: 5004
Number of extensions: 50017
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)