Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e22
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0393 - 18550972-18551562,18551864-18552005,18552164-185523...    32   0.33 
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    27   9.4  

>12_02_0393 -
           18550972-18551562,18551864-18552005,18552164-18552382,
           18552733-18552828,18552923-18553035,18553299-18553510,
           18553603-18553700,18554283-18554314,18554984-18555068,
           18555853-18555914
          Length = 549

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 203 LIPIFKT-QSKLSIRDAKLENLSNWAMRVVKQQ 298
           L+ +FKT Q + S  D  LEN+  W+ +++KQQ
Sbjct: 118 LLELFKTSQIRFSCEDLVLENIGTWSAKLLKQQ 150


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 275 PNLIGFLILHHELRVYFVF*ILVLKIVNI*MVIFCKNYFFHD 150
           PN+ G ++LHH    + VF +   + VN  MV++CK+  F +
Sbjct: 336 PNVPGQVLLHHGSHRHGVFSVTSGRRVN--MVMWCKSSVFRE 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,482
Number of Sequences: 37544
Number of extensions: 257921
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)