Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e22
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-7|CAA92627.2|  364|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z68301-7|CAA92627.2|  364|Caenorhabditis elegans Hypothetical
           protein W01B6.6 protein.
          Length = 364

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -1

Query: 543 QKEPQS*EEPAKQ--TQRVYNTSTISD--LKLTLPKPTCMVY*ISRNNPK 406
           +KE  S +E AK+      +NTSTI+    +L+ PKP+  +  I +NNPK
Sbjct: 67  EKEQWSGDETAKKLVASGAFNTSTITSGFKELSNPKPSADMCSIFKNNPK 116


>Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.5 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -1

Query: 321 VIKQMHLFCCLTTRIAQFDRFSNFASRIESLLCVLNIGIKNC*HLNGYIL*KLLFSRLKF 142
           +I    +FC   + I  + R +NF+S I +     N  +  C   N  ++  L F R  F
Sbjct: 45  IIMHSKVFCNSYSMIVTYGRPTNFSSSIPNSAPTWNDCVVQCYISNTCVVIVLNFERNIF 104

Query: 141 HKGFHILYTSLYP 103
            K   + Y+   P
Sbjct: 105 DKSIQLAYSPASP 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,087
Number of Sequences: 27780
Number of extensions: 272919
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)