Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e22
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   7.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.9  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +1

Query: 424 YSIDHTSRFRKC*LQVRNRACIVYPLSLFRRFFSGLWLFLEPVVELTFLFIF 579
           + ID    FR   +Q  N   ++    L  + +   W FL+ +  +   +IF
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +1

Query: 424 YSIDHTSRFRKC*LQVRNRACIVYPLSLFRRFFSGLWLFLEPVVELTFLFIF 579
           + ID    FR   +Q  N   ++    L  + +   W FL+ +  +   +IF
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 156 KKVIFTKYNHLNVNNF*YQYLKHKVNSQFVMQN 254
           +K+I +  N+ N NN  Y+Y  +  N +   +N
Sbjct: 312 RKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKN 344


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +1

Query: 424 YSIDHTSRFRKC*LQVRNRACIVYPLSLFRRFFSGLWLFLEPVVELTFLFIF 579
           + ID    FR   +Q  N   ++    L  + +   W FL+ +  +   +IF
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 175 FVKITFFTIKISQRVSYFVHISLSCALI 92
           ++ ITF  I   + + YF ++ + C LI
Sbjct: 218 YIDITFVVIIRRRTLYYFFNLIVPCVLI 245


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 523 RRTGETNSAGIQYKHDFGLEANTSETYLYGLLNI 422
           R  G  NS  +  +HD GL A        G LNI
Sbjct: 40  RCMGGINSRNMDIEHDPGLAAVLQYLIRSGQLNI 73


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 351 EIERYQYVILELIVF 395
           EIE Y Y +L+++++
Sbjct: 178 EIESYGYTVLDVVMY 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,154
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)