Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e19
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0239 + 1744353-1746365                                           29   3.2  
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686...    28   7.3  
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563...    27   9.7  
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008...    27   9.7  
04_01_0078 - 879016-881288,884676-885141                               27   9.7  
03_06_0637 - 35219212-35219754,35220405-35220587                       27   9.7  
03_03_0150 + 14872035-14872472,14874895-14875725                       27   9.7  

>07_01_0239 + 1744353-1746365
          Length = 670

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 241 LSPYHNLPKTDANRVTPKFSLDSSSTIYV--HSYVYIVAYFC 360
           LS  HNL K   + +   FS  SS+ +Y+  H++ + +A FC
Sbjct: 206 LSATHNLSKLLLDHMYVGFSSSSSAALYISGHAHGHFIAGFC 247


>08_02_0592 +
           19064025-19066596,19067036-19067084,19068530-19068605,
           19068767-19068922
          Length = 950

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 382 NTGFLESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVNCGMVISFIKD-CCNYRNV 206
           + G LE Y N+P C+  + +   +   +++   +  R+F   C  ++  ++      R +
Sbjct: 672 HNGKLELYLNVPSCVERHRQHGSENGNDRSKIRMLCRRFQFICNALLHAVEQGSLMVRRI 731

Query: 205 NLSMTIVIDK 176
           +L    +I K
Sbjct: 732 DLEADKIIRK 741


>12_02_1075 -
           25854662-25855015,25855895-25856045,25856141-25856378,
           25856494-25856704,25856973-25857088,25857844-25857877,
           25857996-25858253
          Length = 453

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -2

Query: 505 HAASTIESSTPRVLSVRNRVFFYSRR*NKSIVINGSMPFCQNTGFLESY--KNMPRCIHN 332
           H  S+  SS+PRVL     V  YS R   S +  G +   Q   F+E++  K+ P  I N
Sbjct: 46  HTLSSSFSSSPRVLCWVLAVLGYSYRLQASSLSAGELTDLQGKFFMETFFRKDTP-IIRN 104

Query: 331 YVRISLKTNREKT 293
               S K  R+ T
Sbjct: 105 VKIYSSKELRKAT 117


>09_03_0039 +
           11799277-11799486,11799565-11799710,11800758-11800860,
           11800996-11801182,11801299-11801392,11801530-11801683,
           11801963-11802067,11802151-11802267,11802688-11802801,
           11803171-11803260,11803875-11804057,11809196-11809550,
           11809574-11809643,11809993-11810167,11810251-11810351,
           11810390-11810516,11810639-11810716,11811926-11812270
          Length = 917

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 265 KTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCT 363
           K + +R+T  F+  +  + YV S V +V+Y CT
Sbjct: 803 KENWDRITKTFAASAILSDYVKSIVTLVSYICT 835


>04_01_0078 - 879016-881288,884676-885141
          Length = 912

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 563 QHLKASLILGY*SLRWTSLPRRLHN 489
           +HL +   LG+ S  W SLP  L N
Sbjct: 834 EHLTSLAYLGFTSCHWNSLPNNLEN 858


>03_06_0637 - 35219212-35219754,35220405-35220587
          Length = 241

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 295 FSLDSSSTIYVHSYVYIVAYFCTTPKSP 378
           FSLDS STI V      + Y+C  PK P
Sbjct: 43  FSLDSKSTIGVEFATRTIQYYC-FPKGP 69


>03_03_0150 + 14872035-14872472,14874895-14875725
          Length = 422

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/89 (23%), Positives = 44/89 (49%)
 Frame = -2

Query: 592 FRWSEENRGRNTSKQV*SLATEASAGHPSHAASTIESSTPRVLSVRNRVFFYSRR*NKSI 413
           FR + ++  R  S  + S AT A+A +   + + + +   R+LSV +      ++ + S+
Sbjct: 20  FRSNSDHLMRLHSTWINSAATPAAAPYSRESLAMLAA---RLLSVSDDHLQRQQQQHVSM 76

Query: 412 VINGSMPFCQNTGFLESYKNMPRCIHNYV 326
           +I+ S+P C   G   ++K     + + V
Sbjct: 77  IISTSLPGCTTGGVAPAFKEAIEALRDVV 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,972
Number of Sequences: 37544
Number of extensions: 264860
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)