Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11e19
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.27 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.27 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.83 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.83 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.83 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   4.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   4.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 323 TYIVMYTSWHIFVRLQKARVLTKWHAAIYNNTFILTSRVEKYPIPYGKNSW 475
           TY ++Y    IF + Q + +  +    I NN F   S++E+  I +    W
Sbjct: 384 TYFILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYTDW 434


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 323 TYIVMYTSWHIFVRLQKARVLTKWHAAIYNNTFILTSRVEKYPIPYGKNSW 475
           TY ++Y    IF + Q + +  +    I NN F   S++E+  I +    W
Sbjct: 384 TYFILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYTDW 434


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 98  MYYINNKQYSCSNYRQ*HTVYLITYSLID 184
           +YY+N +Q+  S+Y+Q    Y    +++D
Sbjct: 275 LYYVNTEQFRTSDYQQNDIHYEGVQNILD 303


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 98  MYYINNKQYSCSNYRQ*HTVYLITYSLID 184
           +YY+N +Q+  S+Y+Q    Y    +++D
Sbjct: 275 LYYVNTEQFRTSDYQQNDIHYEGVQNILD 303


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 98  MYYINNKQYSCSNYRQ*HTVYLITYSLID 184
           +YY+N +Q+  S+Y+Q    Y    +++D
Sbjct: 275 LYYVNTEQFRTSDYQQNDIHYEGVQNILD 303


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 IVTAIFNKTYHHTTIYRKL 271
           I++++ N T H+   Y+KL
Sbjct: 303 IISSLLNNTIHNNNNYKKL 321


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 IVTAIFNKTYHHTTIYRKL 271
           I++++ N T H+   Y+KL
Sbjct: 314 IISSLLNNTIHNNNNYKKL 332


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 IVTAIFNKTYHHTTIYRKL 271
           I++++ N T H+   Y+KL
Sbjct: 314 IISSLLNNTIHNNNNYKKL 332


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 IVTAIFNKTYHHTTIYRKL 271
           I++++ N T H+   Y+KL
Sbjct: 303 IISSLLNNTIHNNNNYKKL 321


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 376 GFLESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVN-CGMVISFIKD 227
           G   +Y N   C++ Y R SL    + T     ++  SVN   M I+ + D
Sbjct: 99  GSCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTITELTD 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,435
Number of Sequences: 438
Number of extensions: 3319
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)